Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08338 ATGCAGAAGGAGAGTGTTGTTTTTCGCAATCAACAAGGAAATATGTCAGGTGAAGAAGGGGCTGTTGTAGCTGAGCCAGCTGCTTCAATTCCAGGTGAGCCAATGGACATCATGACTGCCTTACAGCTTGTGCTGAGAAAGTCACTGGCTTATGGTGGTCTTGCGCGGGGTCTTCATGAAAGTGCAAAAGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTCAAACTGGTGAAAGCCCTTTGTGCAGAGCACAATGTTAGCCTATTGACAGTTCCTAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTATGTAAGATTGATTCAGAAGGAAAGGCTAGGAAGGTAACTGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGAGAGGAACATGAGGCCTATAATGTTGTTCTACAGCATGTGAAATCTCATTGA 465 0.4559 MQKESVVFRNQQGNMSGEEGAVVAEPAASIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSH. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08338 154 SUPERFAMILY L30e-like 34 152 IPR029064 -
Seca4g08338 154 ProSitePatterns Ribosomal protein S12e signature. 40 58 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g08338 154 Gene3D - 22 154 IPR029064 -
Seca4g08338 154 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 133 IPR004038 -
Seca4g08338 154 PANTHER 40S RIBOSOMAL PROTEIN S12 30 154 - -
Seca4g08338 154 PRINTS Ribosomal protein S12E family signature 99 120 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g08338 154 PRINTS Ribosomal protein S12E family signature 58 74 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g08338 154 PRINTS Ribosomal protein S12E family signature 44 57 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g08338 154 PRINTS Ribosomal protein S12E family signature 124 137 IPR000530 GO:0003735|GO:0005840|GO:0006412
Seca4g08338 154 FunFam 40S ribosomal protein S12 21 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08338 Seca-Chr4 198121799 198123889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08338 30 154 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 7.60e-67 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08338 K02951 - gmx:100500093 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08338 4 198121799 198123889 Seca4g08338 4 198121799 198123889 PCT