Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08337 ATGCCTGCTGCGGAATCTTCATCAGCTTCCGGTTCCGGCCAAACCATATGTGTCACCGGCGCTGGTGGCTTCATCGCCTCTTGGATGGTTAAACTCCTCTTAGAAAAAGGATACAATGATCCCAAGAATGGGCATTTGAAAGAGTTGGAAGGAGCCTCTGAGAGGCTAACTCTGCATAAGGTGGATCTCCTTGATCTTCAATCTGTCCAAGCAGCCATTCAAGGCTGTGACGGTGTCTTTCACACCGCTTCTCCCGTCACTGATAACCCCGAAGAAATGGTGGAGCCAGCGGTGAATGGAGCCAAGAATGTGATCATAGCAGCTGCAGAAGCAAAAGTGCGACGCGTTGTCTTCACCTCATCAATTGGCGCAGTCTATATGGACCCCAATAGGAGTGTCGATGTGGTGGTTGATGAGTCTTGTTGGAGTGATCTAGAGTATTGCAAGAACACCAAGAATTGGTACTGCTATGGGAAGGCTGTGGCTGAACAAGCGGCATGGGATACGGCAAAAGAGAAAGGGGTGGATTTGGTTGTAGTGAACCCAGTTTTGGTTCTTGGACCATTACTACAACCCACCATCAATGCTAGCACAATTCACATCCTTAAGTACCTTACTGGTTCTGCCAAGACATATGCAAATGCTACACAGGCTTATGTTCATGTTAGGGATGTGGCATTGGCCCACATACTTGTTTATGAGAAACCTTCTGCTTCTGGTAGATACATATGTGCCGAAAGTTCATTGCACCGTGGAGAGCTAGTTGAAATTCTGGCCAAGCATTTCCCGGAATACCCAGTTCCTACCAAGTGTTCAGATGAAAAGAAGCCGAGAGTAAAACCCTACATCTTTTCAAACCAAAAGCTGAAAGATTTGGGATTGGAATTCACTCCAGTCAGTCAGTGTTTGTATGAAACCGTTAAGAGCCTGCAGGAGAAAGGTCACCTTCCTGTTCCTAAGAAAGAAGACTCTATTACAGTGAATTCCTAA 990 0.4636 MPAAESSSASGSGQTICVTGAGGFIASWMVKLLLEKGYNDPKNGHLKELEGASERLTLHKVDLLDLQSVQAAIQGCDGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPNRSVDVVVDESCWSDLEYCKNTKNWYCYGKAVAEQAAWDTAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYICAESSLHRGELVEILAKHFPEYPVPTKCSDEKKPRVKPYIFSNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPVPKKEDSITVNS. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08337 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 311 IPR036291 -
Seca4g08337 329 Gene3D - 5 329 - -
Seca4g08337 329 FunFam Cinnamoyl-CoA reductase 1 7 328 - -
Seca4g08337 329 Pfam NAD dependent epimerase/dehydratase family 16 238 IPR001509 -
Seca4g08337 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 15 307 - -
Seca4g08337 329 CDD FR_SDR_e 17 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08337 Seca-Chr4 198083831 198087383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08337 13 270 Monolignol Biosynthesis Gene Families AT1G80820 74.157 1.22e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08337 K09753 - gmx:100789070 578.17