Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08336 ATGCTATCCCCCTTTTTTAAGGAGGCTTGCAGATTTTACATGATTGAGAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGTGGTGCTGTGTGCAGTTCTTCAAATTTGAATGAAGAAGATCAGATGAGCTGTCAAGATTTGGATCTAAACAAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGACAGTATGTCATGCAGGGGTTTCTTGATCTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTAGCAGTCATTGGTGGCTCTGCTGGTGCTGGAAAGCTCATAATAATTGCATCAATGATCCTATCATTTGAGCTACCTTTTGCTTTGGTTCCACTCCTCAAGTTCACAAGTAGCAAAACCAAGATGGGGCAACATGTTAACTCTATCACGATTTCGGCTATTACTTGGATAATTGGTTCCCTGATTATGGCCATCAATATATACTATTTAATAACTGGCTTCATCAAGCTGCTTCTCCGAAGTCATTTTGAAGTTGTGGCTAAGGTGTTTCTGGGGATATTGGGATTTTCAGGTATGGCAGTATATTTGGCAGGTATAGCATATCTAGTACTCCGCAAAAATAAAGAGGCTACACACCTATTGGCTCTAACAGCACCAGAAAGTCAGCAAATGGAAAATGGACAAGGCAATGGATCAATCTATTGTCTTCCAAGAGAAGACATAGTAAGCATGCAATTACCTCAAAGAAGTTCTCCTGCAGATCTTGACTGA 870 0.4046 MLSPFFKEACRFYMIESAFALMVAFLINVCVISVSGAVCSSSNLNEEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGQHVNSITISAITWIIGSLIMAINIYYLITGFIKLLLRSHFEVVAKVFLGILGFSGMAVYLAGIAYLVLRKNKEATHLLALTAPESQQMENGQGNGSIYCLPREDIVSMQLPQRSSPADLD. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08336 289 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 7 243 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g08336 289 Pfam Natural resistance-associated macrophage protein 8 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g08336 289 NCBIfam Nramp family divalent metal transporter 6 165 - -
Seca4g08336 289 PRINTS Natural resistance-associated macrophage protein signature 144 163 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g08336 289 PRINTS Natural resistance-associated macrophage protein signature 112 129 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g08336 289 PRINTS Natural resistance-associated macrophage protein signature 84 103 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08336 Seca-Chr4 198076326 198079590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08336 7 282 Inorganic Solute Cotransporters AT1G15960 75.540 1.76e-148 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08336 K21398 - gmx:100797298 501.13