Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08335 ATGGCTGTCACAGGCTCTGGTTCTGGGCAGCCACAATTTATTTCGAGCACTGGAAACCGAAGCCTCTCGAATGCACCGCTGATTGAGAATACAGATATTGATCAGATTGTTGTGCCTGATAGGACAAGCTGGAAAAATTTATTTGCTTACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTCGAGACGGATCTTCAGGCTGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTTGCATCTTGTGCTGCACTTGTAATTCAATCAATGGCAGCCAATCTTGGGGTGGTCACTGGAAAGCACTTAGCAGAGCATTGTAGAACTGAATATCCCCGAGTTCCCAACTTTATCCTTTGGATTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAATATGCTCTTCAACATACCTGTTTGGATCGGTGTTCTTTTGACAGGACTCAGCACATTGATCCTCTTAGCATTACAACAATATGGGGTAGTCTACAGTATTCCGTTCTATGGTTTTGATATCATAAAAAGAATTTTTGTATCCTGA 594 0.4209 MAVTGSGSGQPQFISSTGNRSLSNAPLIENTDIDQIVVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRTEYPRVPNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVVYSIPFYGFDIIKRIFVS. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08335 197 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g08335 197 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g08335 197 NCBIfam Nramp family divalent metal transporter 52 177 - -
Seca4g08335 197 Pfam Natural resistance-associated macrophage protein 67 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g08335 197 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 39 178 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08335 Seca-Chr4 198072310 198075438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08335 3 196 Inorganic Solute Cotransporters AT1G80830 76.768 4.82e-105 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08335 K21398 - gmx:100797298 329.331