Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08331 ATGGACAATCAACAGCAACAATCCAAGAACTCCAAGAGGAACATTCTCTTCAACAAGTACGAGATAGGGAGGCTCCTTGGCCAGGGGAATTTCGCCAAGGTCTACCACGGAAGAAACATAATCACCAACGAGAGCGTTGCCATCAAGGTGATAAAGAAAGAGAAGATGAAAAAAGAGAGGCTTGACAGGCTCGTGAAGCAGATCAAGCGTGAGGTTTCAGTGATGAGGCTCGTTCGTCACCCCCACATCGTTGAGCTAAAAGAAGTGATGGCCAATAAAGCTAAAATCTTTATGGTTGTTGAATACGGGAAAATGAAAGAAGAAATTGCTAGGAAGTACTTTCAACAACTCATCAGCGCCGTTGATTTCTGTCACAGCCGTGGCGTAACTCACCGTGATTTGAAGCCAGAGAATCTTCTCTTGGACGAGAATGAAGACCTTAAAGTTTCTGACTTTGGCTTGTCGGCGTTGCCGGAACAACGTAGATCCGACGGAATGCTCTTAACGCCCTGTGGAACGCCGGCTTACGTGGCGCCGGAGGTTTTGAAGAAGAAAGGGTATGATGGGTCTAAAGCTGATATATGGTCCTGTGGGGTTATCCTCTTTGCTCTGCTTTCTGGGTATCTTCCATTTCAAGGTGAGAATGTGATGAGGATTTATAGCAAGTCTTTTAAAGCTGATTATGCTTTACCTGAATGGATCTCCCCTGAGGCTAAGAATTTGATCTCTAATTTGCTTGTTGTTGACCCTGAAAAGAGGTATTCCATCCCTGATATAATGAAGGATCCTTGGTTTCAAATTGGGTTCTTGAGACCTATTGCTTTTTCAATGAAGGAATCTGCTATGGAAGATAACATTAATTTCAATGAGGACGATGATGGGAATAAATTGGTTGGGGCGAAGCCAGCTCGTCCTTCTTACAATGCATTTGAGATCATTTCGTCGTTGTCGCATGGTTTTGATCTTAGGAACTTGTTTGAGACGAGGAAACGGTCACCTTCGATGTTCATTTCGAAGTTTTCTGCTTCGGCGGTGCTGGGGAAGCTTGAGGCGGTGGCGAAGAAGCTGAATTTTAGGGTAACGGGGAAGAAAGAGTTCATGGTGAGAATGCAGGGGACAGAGGAGGGAAGGAAGGGGAAGCTGGCTATGACGGTGGAGGTTTTTGAGGTGGCGCCGGAGGTGGCTGTGGTGGAATTCTCTAAGTCTGCCGGCGACACACTTGAGTACATAAAATTCTGTGAGGATCAAGTTAGGCCTTCTCTCAAGGACATCGTTTGGAGCTGGCAAGGGGACAATTGTTGCCCTCAGTAG 1311 0.46 MDNQQQQSKNSKRNILFNKYEIGRLLGQGNFAKVYHGRNIITNESVAIKVIKKEKMKKERLDRLVKQIKREVSVMRLVRHPHIVELKEVMANKAKIFMVVEYGKMKEEIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLSGYLPFQGENVMRIYSKSFKADYALPEWISPEAKNLISNLLVVDPEKRYSIPDIMKDPWFQIGFLRPIAFSMKESAMEDNINFNEDDDGNKLVGAKPARPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKFSASAVLGKLEAVAKKLNFRVTGKKEFMVRMQGTEEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYIKFCEDQVRPSLKDIVWSWQGDNCCPQ. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08331 436 FunFam Maternal embryonic leucine zipper kinase 11 298 - -
Seca4g08331 436 CDD CIPK_C 308 422 - -
Seca4g08331 436 ProSiteProfiles Protein kinase domain profile. 20 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08331 436 FunFam Non-specific serine/threonine protein kinase 303 426 - -
Seca4g08331 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca4g08331 436 FunFam Aurora kinase A 12 106 - -
Seca4g08331 436 SUPERFAMILY Protein kinase-like (PK-like) 16 266 IPR011009 -
Seca4g08331 436 Coils Coil 51 71 - -
Seca4g08331 436 Gene3D Kinase associated domain 1, KA1 307 427 - -
Seca4g08331 436 Pfam Protein kinase domain 20 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08331 436 Gene3D Transferase(Phosphotransferase) domain 1 11 306 - -
Seca4g08331 436 Pfam NAF domain 306 361 IPR004041 GO:0007165
Seca4g08331 436 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Seca4g08331 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 422 - -
Seca4g08331 436 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165
Seca4g08331 436 SMART serkin_6 20 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08331 Seca-Chr4 197970176 197971538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08331 12 432 CBL-interacting serine-threonine protein kinases AT5G10930 60.092 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca4g08331 Pkinase 1.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08331 - - gmx:100804244 721.85