Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08325 ATGGATTATTCTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAACCCCCACAGGGTTCATGAAGAAGTTCCCGTCTGTTCATTTCAGAAAAAGGAGGTTGAAAACAATTTTTTCTCATTGGGATTGAAGCAGTCTTCTGTAAAAGAAGAGTCTGCTGGTGATTTGGTGGAGGAGCTTAAGCGGGTGAGTGCAGAAAACAAGAAGTTGACCGAAATGCTCACTGAGATGTGTGAGAACTACAACACTTTGAGAAGCAACTTGATGGAATACATGAGGAAAAATCCTGAAAAGGAACTCAACTCATCAAAGAAAAGGAAGTCTGAGAGCAGTAACAACAATGGTAATCAAATGGGAGTTAATGGAAACTCTGAAAGCAGCTCAACTGATGAAGAATCATGCAAGAAACCAAGAGAAGAGACCATCAAGGCAAAAGTTTCCAGAGTTTATTTCAGGACCGAAGCATCTGATACAAGCCTTATTGTGAAAGATGGATATCAGTGGAGGAAATATGGACAAAAAGTGACCAGAGATAACCCTTCTCCAAGAGCATACTTTAAATGCTCTTTTGCTCCAAGCTGCCCAGTTAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCAGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCTAATCAAATGGAGGCAACTTCAGGCTCCAACCGTTCTATGACCCTAGCTTCAGCACCTGGTTCAGGGTCTCTTAGTTCTTCTGCACCTATGGTTACCCTTGACTGGACAAAATCTAAGCCCAGCAATGAGTCTAAGAATATAAGTCCAAAAATCGATTCACCGGAAGTGCCTCAGAATTTGGTGGATCAGATGGCTAATTCCTTAACCAAGGATCCTAATTTCAGAGCAGCACTTGTTGCTGCAATCTCAGGAAAAATGTTACACAAGAATTAA 945 0.4127 MDYSSSWINTSLDLNINPHRVHEEVPVCSFQKKEVENNFFSLGLKQSSVKEESAGDLVEELKRVSAENKKLTEMLTEMCENYNTLRSNLMEYMRKNPEKELNSSKKRKSESSNNNGNQMGVNGNSESSSTDEESCKKPREETIKAKVSRVYFRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPNQMEATSGSNRSMTLASAPGSGSLSSSAPMVTLDWTKSKPSNESKNISPKIDSPEVPQNLVDQMANSLTKDPNFRAALVAAISGKMLHKN. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08325 314 SMART WRKY_cls 163 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g08325 314 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 27 310 IPR044810 GO:0003700
Seca4g08325 314 FunFam WRKY transcription factor 40 148 225 - -
Seca4g08325 314 MobiDBLite consensus disorder prediction 216 280 - -
Seca4g08325 314 Pfam WRKY DNA -binding domain 164 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g08325 314 SUPERFAMILY WRKY DNA-binding domain 160 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g08325 314 MobiDBLite consensus disorder prediction 97 140 - -
Seca4g08325 314 ProSiteProfiles WRKY domain profile. 158 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g08325 314 Coils Coil 54 81 - -
Seca4g08325 314 MobiDBLite consensus disorder prediction 108 129 - -
Seca4g08325 314 MobiDBLite consensus disorder prediction 224 280 - -
Seca4g08325 314 Gene3D WRKY domain 145 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08325 Seca-Chr4 197827925 197830046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08325 1 314 WRKY Transcription Factor Family AT1G80840 54.242 2.49e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g08325 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08325 - - gmx:100798375 487.263