Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08320 ATGATGAAGGAGAAGGATGAAAGAATTCGTAGGACTGGAGAACTTTTGGCTTATATTCGAACTTTGAAGATGTATGGATGGGAACTTCTGTTTTCTAGTTGGTTAATGGAGACAAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAATACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCAACACTCTTTTCTCTTTTCACATTTGGACTTTTTGCATTGATGGGACATCAACTTGATGCTGCGATGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTGAATTCATTTCCTTGGGTGATTAATGGTTTGATTGATGCATTCATATCCTCCAGACGGTTGAGTAGGTTTCTCTCTTGTCCTGAACATGAATTCAAAGTAGGAGAGAGAAGTTCCTGTTCATCACCATTCCTGAGTAAACAGCCTGATTCTTCACAAGATGTGGCTGTATTTGTCCAAGATGCATGTTGTACTTGGTCGAGCAGTGATGAACAAGCATTAAATTTAGTGTTGAATCATGTGAATCTAAGCCTGTCCAAGGGTTCCTTTGTCGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATTCTTGGAGAAATGCGGCTTGCTCATGGATCTATTTATTCCAACGGATCCGTAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTGCGTGACAATATATTATTTGGGAAAAGCGATGATCCTGAAAGGTATACAGATACACTGCAGGCATGCGCATTAGATGTTGATATCTCATTGATGGTTGGAGGTGACATGGCTTATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCACTCTATCATGGCTCAGATGTTATTATGCTTGATGATGTCCTGAGTGCAGTTGATGCACAAGTTGCTCAATGGATCCTACACAATGCCATTTTAGGTCCTCTTATGCAGGGAAAAACTCGATTGCTCTGTACCCACAACATTCAGGCAATGTCTTCTGCTGATATGATTGTTGTATTGGACAAAGGACACATAAAGTGGATGGGAAATTCAGCTGAGTTTCTAATTTCTTCATATACAAGATTCTCCCCATTGAATGAAATTGATTCAACTTTAAATAGTCATGGGCAATCTTGTAGCACCAATTCTTCTCCCAAATCAAAGGAGCAGTCTCTGATTATGCATGCTACCGAGGGAATAGAGGAGGTAATTGAAGTTGAGTTGAGGAAAGAGGGAAAGGTCGAAGTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATCACAGTTGTTATATGTCTTTCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACATTAGACAGCAGTCAAACAAGATACTCTGTGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCAGCAATTAAGGTACACAATAGACTGCTTAGCAAGCTTATCGATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGAAGAATATTGAATAGGTTTTCTTCAGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTTGTAGGCTTGTTGGGTATTGCAATAATTTTGTCTTATGTACAGGTCTTCTTCTTAGTCCTGTTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTTTACAGGTCAACATCTAGAGAATTACGAAGACTGGATAGTGTTTCACGTTCTCCAATATATACATCTTTCACAGAAACACTTGATGGGTCAGCAACTATTAGAGCGTTTAAATCTGAGGACTTTTTCTTTGCCAAATTCACTGAACATGTAACATTGTATCAGAAGACTTCTTATACAGAGATAGTGGCAAGTCTGTGGCTTTCCTTGCGTCTTCAATTATTAGCTGCATTTATCATCTCATTCATAGCCCTGATGGCTGTTGTCGGATCTCATGGCAGTCTGCCTATCAACTTCGGTACCCCAGGACTGGTTGGATTGGCCCTCTCTTATGCAGCTCCAATTGTGTCCCTGTTGGGGAGTTTTTTAACAAGTTTTACTGAAACAGAGAAGGAAATGGTTTCAGTTGAAAGAGCCCTTCAATACATGGATATTCCTCAAGAAGAACAAGCTGGATGCCTATACTTAAATCCAAATTGGCCAAATCAAGGAGTTATTGAATTCCAGCATGTTACTTTGAAATACATGCCATCTTTGCCAGCTGCACTCAGCAATCTTACTTTTAGAATTGCAGGAGGGACACAGATTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTATATTAAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGCTCAATCACAGTTGACGGCATGGACATTAAAAATATTGCTGTCAGAGAACTACGTACACACTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCACTAAGGGATAACCTAGATCCATTCAAAATGCATGATGACTTAAAAATTTGGAATGCATTGGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTTGTAAAGGAAGAGGGGATGTCATTTTCAGTTGGCCAGCGGCAGCTTCTTTGCCTTGCACGTGCCCTTCTCAAATCTTCAAAGGTTCTCTGTTTAGATGAGTGTACGGCCAGTGTAGACATTCAAACTGCTTCACTGCTGCAAAGTACCATATCCAGTGAATGCGAAGGAATGACAGTGGTCACAATTGCTCACCGGATTTCAACTGTTATAAATATGGATAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAAGGAAATCCGCAGATTCTTCTGAAAGATGACACCTCTATATTTTCTAGTTTTGTTAAAGCCTCATCAATGTAA 3027 0.4011 MMKEKDERIRRTGELLAYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAFISSRRLSRFLSCPEHEFKVGERSSCSSPFLSKQPDSSQDVAVFVQDACCTWSSSDEQALNLVLNHVNLSLSKGSFVAVIGEVGSGKSSLLYSILGEMRLAHGSIYSNGSVAYVPQVPWILSGTVRDNILFGKSDDPERYTDTLQACALDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARALYHGSDVIMLDDVLSAVDAQVAQWILHNAILGPLMQGKTRLLCTHNIQAMSSADMIVVLDKGHIKWMGNSAEFLISSYTRFSPLNEIDSTLNSHGQSCSTNSSPKSKEQSLIMHATEGIEEVIEVELRKEGKVEVGVYKNYAVFTGWFITVVICLSAILMQASRNGNDLWLSYWVDTTLDSSQTRYSVSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAAIKVHNRLLSKLIDAPVQFFDQTPGGRILNRFSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSATIRAFKSEDFFFAKFTEHVTLYQKTSYTEIVASLWLSLRLQLLAAFIISFIALMAVVGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQAGCLYLNPNWPNQGVIEFQHVTLKYMPSLPAALSNLTFRIAGGTQIGIIGRTGAGKSSILNALFRLTPICTGSITVDGMDIKNIAVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMHDDLKIWNALEKCHVKEEVEVAGGLDILVKEEGMSFSVGQRQLLCLARALLKSSKVLCLDECTASVDIQTASLLQSTISSECEGMTVVTIAHRISTVINMDNILILDHGKLAEQGNPQILLKDDTSIFSSFVKASSM. 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08320 1008 FunFam ABC transporter C family member 5 413 754 - -
Seca4g08320 1008 FunFam ABC transporter C family member 13 140 394 - -
Seca4g08320 1008 CDD ABC_6TM_MRP7_D2_like 448 748 - -
Seca4g08320 1008 ProSitePatterns ABC transporters family signature. 907 921 IPR017871 GO:0005524|GO:0016887
Seca4g08320 1008 SUPERFAMILY ABC transporter transmembrane region 2 131 IPR036640 GO:0005524|GO:0016020
Seca4g08320 1008 CDD ABCC_MRP_domain1 159 360 - -
Seca4g08320 1008 SUPERFAMILY ABC transporter transmembrane region 445 753 IPR036640 GO:0005524|GO:0016020
Seca4g08320 1008 ProSitePatterns ABC transporters family signature. 285 299 IPR017871 GO:0005524|GO:0016887
Seca4g08320 1008 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 157 384 IPR003439 GO:0005524
Seca4g08320 1008 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1006 - -
Seca4g08320 1008 FunFam ATP-binding cassette (ABC) transporter, putative 758 1005 - -
Seca4g08320 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 372 IPR027417 -
Seca4g08320 1008 CDD ABCC_MRP_domain2 769 988 - -
Seca4g08320 1008 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 449 736 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g08320 1008 Pfam ABC transporter 178 310 IPR003439 GO:0005524
Seca4g08320 1008 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 113 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g08320 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 764 996 IPR027417 -
Seca4g08320 1008 Gene3D ABC transporter type 1, transmembrane domain 418 755 IPR036640 GO:0005524|GO:0016020
Seca4g08320 1008 Pfam ABC transporter 788 935 IPR003439 GO:0005524
Seca4g08320 1008 Gene3D - 141 398 IPR027417 -
Seca4g08320 1008 Gene3D - 758 1006 IPR027417 -
Seca4g08320 1008 Gene3D ABC transporter type 1, transmembrane domain 1 130 IPR036640 GO:0005524|GO:0016020
Seca4g08320 1008 Pfam ABC transporter transmembrane region 450 698 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g08320 1008 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 771 1004 IPR003439 GO:0005524
Seca4g08320 1008 SMART AAA_5 797 981 IPR003593 GO:0016887
Seca4g08320 1008 SMART AAA_5 187 361 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08320 Seca-Chr4 197610214 197633801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08320 768 994 Calmodulin-binding Proteins AT2G36910 32.759 3.18e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08320 K05674 - gmx:100814181 1748.79