Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08315 ATGCCTTCAAGACCCTTTCCTCCTACAAGTCCCAGTTCTTTCACCAAAAACAAGGTGCTGTTCATAGCACTCACCATTTCAGCTTCTGTTGTGATTTTCTGCTCAATTCTCTACTTCCTTTACCACCTATGGCATTTTCTTGTACACAGAGCTAAGACTATCCCCTTTGATGCTAGTGCTCCCTTGAAGCTCCAGAGATTCTCATACAAAGACTTAAAGCAAGCCTCCAATGGATTTGACACTGCCAATGTCATTGGTAAAGGTGGTTCTGGCACTGTTTTCAGGGGAATACTTAAAGATGGGAAATTGGTTGCTATCAAGCGCTTGGACTCATTGTCTTTGCAGACAGAACGAGAGTTTCAAAATGAGCTGCAGATTCTTGGAGGGTTAAGATCCCCTTTCTTGGTGACCCTTTTGGGCTATTGTGTTGAAAAGAACAAAAGGGTGTTGGTGTATGAGTATATGCCCAACAGAAGCTTGCAGGAGTCCCTCTTTGGAGATGATGGGTGTTTGAGTTTGAGTTGGGAGAGCAGGTTTTGCATAATATTGGATGTTGCTAGAGCATTGGAGTTCTTGCACCTTGGATGTGATCCACCAGTGATCCATGGTGACATCAAGCCAAGCAATGTTCTTCTTGATGCAGAGTACCGTGGGAAGATCTCAGACTTTGGGTTGTCAAGGATTAAGGTGGAGGGTGAATTTGGTATGGACTTGTTTAGCCAGGACCTGGGGAAAAGCCAGGAGCTTTGGAAAAGTCAAGAGCTTTCAGGTAATTTAACTGCTGAAACTCCAGCTATTGGTACTCCAGTTGAAAGTGTTAGTGAAGTAGATTTTGCTCAAGCTTTGCAAGCCTCTTCTTCATCCAAAAATAGTAGGACATGTTTTAATGCTAAAGCTTTGAACTTGAATTCCTTGAATTATAATGCCAATATTGCTAGTGAAAGTGAAATTAGGACTGTAAATGCAAAGGGTAAGGAAGTTTCAACTTTGGATATAGGAGGGGATGATTGGAATAACAAGTTTGTTCCTTATGATGATGAGTTTTCTAGCATTGATTTTAGTAAGGAGTTGAGTGCTAATGCTTCTTTGGTGGATGATGAGAAGGCAAATGGGAAGCAATGGGGAAAGGACTGGTGGTGGAGACAGGATGGAAGTGGTGAATTATGTAGTAAAGATTATGTCATGGAGTGGATAGGGAGTCAGATTTGTCCATCAAATGCTGATTGGGATGATGGTAAGAACAATGTTCATGAGAAAGTAGAGTTGGAAAATTCAAGTCCAATTGATAAAGCCAATGATGCAAATGGACCCCAATTACAGGTATCTGGGGTAGGAAATACAGATAATGGGGTTGATAAGAAAGAACCAAGGAGAAAGAAAAGTCACAGGAAGATGCAAGAGTGGTGGAAAGAAGAACATCTTGCTGAATTAAGCAAGAAGACTAGTAAGCTGAAAAATCTTCAAACCAAATGGAAGAAAGGCTTAAAAGTGCCCCATTTTGATTTGGGCAGAAGGTTTTATCTTTGCCAACGTAGGAACTATGGAGAGGAGGGTCAGAATGAGTGTGATCAAAATGGGGAATTTAGCTTCAGAAGAGGTTGGAGGAAGAAAAGCACTCATTCCATTGGAAGTGACATGTGGAGTGGAGATCTTTTCAGCCGTGAGCTCAGCAGCACAACTAGCATGAGGGGAACACTGTGTTATGTGGCACCAGAATATGGAGGGTGTGGATTCTTAATGGAGAAAGCTGACATTTACAGTTTTGGAGTTTTGATTCTTGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCCCCCATGAAGCTAGAGAAAGCTAATTTAATAAGCTGGTGTAGGCACTTGGCTCAAGTTGGTAACATTTTAGAACTAGTAGATGAAAAATTGAAAGAAGATTTCAACAAGGACCAAGCAAGCCTTTGTATCAACTTGGCACTAACATGTTTACAGAAAATCCCAGAGTTGCGGCCAGATATTGGCGATATTGTTAAGATTTTGAAAGGGGAAATGGACCTTCCACCACTTCCATTTGAGTTCTCCCCTTCTCCACCTTCCAAATTATACAGCAGATCAAGGAGAAAACAGAAAGCCACTACTGAATAG 2127 0.4142 MPSRPFPPTSPSSFTKNKVLFIALTISASVVIFCSILYFLYHLWHFLVHRAKTIPFDASAPLKLQRFSYKDLKQASNGFDTANVIGKGGSGTVFRGILKDGKLVAIKRLDSLSLQTEREFQNELQILGGLRSPFLVTLLGYCVEKNKRVLVYEYMPNRSLQESLFGDDGCLSLSWESRFCIILDVARALEFLHLGCDPPVIHGDIKPSNVLLDAEYRGKISDFGLSRIKVEGEFGMDLFSQDLGKSQELWKSQELSGNLTAETPAIGTPVESVSEVDFAQALQASSSSKNSRTCFNAKALNLNSLNYNANIASESEIRTVNAKGKEVSTLDIGGDDWNNKFVPYDDEFSSIDFSKELSANASLVDDEKANGKQWGKDWWWRQDGSGELCSKDYVMEWIGSQICPSNADWDDGKNNVHEKVELENSSPIDKANDANGPQLQVSGVGNTDNGVDKKEPRRKKSHRKMQEWWKEEHLAELSKKTSKLKNLQTKWKKGLKVPHFDLGRRFYLCQRRNYGEEGQNECDQNGEFSFRRGWRKKSTHSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQVGNILELVDEKLKEDFNKDQASLCINLALTCLQKIPELRPDIGDIVKILKGEMDLPPLPFEFSPSPPSKLYSRSRRKQKATTE. 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08315 708 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Seca4g08315 708 MobiDBLite consensus disorder prediction 685 708 - -
Seca4g08315 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Seca4g08315 708 Gene3D Phosphorylase Kinase; domain 1 55 154 - -
Seca4g08315 708 FunFam Receptor-like serine/threonine-protein kinase At4g25390 531 680 - -
Seca4g08315 708 Coils Coil 470 490 - -
Seca4g08315 708 MobiDBLite consensus disorder prediction 428 447 - -
Seca4g08315 708 Gene3D Transferase(Phosphotransferase) domain 1 155 267 - -
Seca4g08315 708 Gene3D Transferase(Phosphotransferase) domain 1 535 680 - -
Seca4g08315 708 ProSiteProfiles Protein kinase domain profile. 79 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08315 708 FunFam putative receptor-like protein kinase At1g80870 155 267 - -
Seca4g08315 708 Pfam Protein kinase domain 81 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08315 708 SMART serkin_6 79 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08315 708 FunFam Receptor-like serine/threonine-protein kinase At4g25390 48 154 - -
Seca4g08315 708 MobiDBLite consensus disorder prediction 425 465 - -
Seca4g08315 708 PANTHER OS07G0586332 PROTEIN 6 703 IPR044576 -
Seca4g08315 708 SUPERFAMILY Protein kinase-like (PK-like) 59 694 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08315 Seca-Chr4 197560300 197562426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08315 542 674 Receptor kinase-like Gene Family AT3G58690 30.597 7.50e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Seca4g08315 Pkinase 1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08315 - - gmx:100800845 1233.78