Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08304 ATGGCCAATGGGAGCTTGGAGAGCCGCCTCTACCTTTTTTCTGGATCATCAGATTTGAGCATTATCCAGAGGGTGAATATTTGCAGTGATATAGCTGAAGGGATGGCCTATCTGCATCATCATTCTCCAGTCAAAGTCATACACTGTGATCTAAAACCAAGCAATGTACTTCTCAATGATGACATGACAGCTCTAGTTTCTGACTTTGGGATTGCAAGGCTATTTACCAGTGCCGGAGGAGGTAACGGTGGGGCTATTGATAACATGGGGAAATCTACTGCAAATTTGTTATGGGGATCCATTGGATATATTGCACCAGAATATGGATTTGGATCAAATACATCAACCAAAGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTTACTAGAAAAAGACCAACAGATGACATGTTTGTTGGTGGGTTAAGTCTGCACAAATGGGTAAAGAGTCACTATCATGGAAGGGTAGAAAAAGTGGTAGACCCTGCTTTGGTGACAGCTTCAAGAGATCAATCACAAGAGGTTAAAAGGATGTGGGAAATTGCTATTGCGGAGTTAATTGAGTTGGGGATCCTTTGCACACAGGAGTCACCTTCAACTAGACCTACCATGCTTGATGCAGCAGATGACTTGGATCGTCTCAAGAGATACCTTACTGGGGACACAAGTGGAACTTTTGCCTCATCTCTTGGAATTTCATCTTCCACCGTAGGTGGTGATTGA 732 0.4303 MANGSLESRLYLFSGSSDLSIIQRVNICSDIAEGMAYLHHHSPVKVIHCDLKPSNVLLNDDMTALVSDFGIARLFTSAGGGNGGAIDNMGKSTANLLWGSIGYIAPEYGFGSNTSTKGDVYSFGILVLEMVTRKRPTDDMFVGGLSLHKWVKSHYHGRVEKVVDPALVTASRDQSQEVKRMWEIAIAELIELGILCTQESPSTRPTMLDAADDLDRLKRYLTGDTSGTFASSLGISSSTVGGD. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08304 243 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Seca4g08304 243 SUPERFAMILY Protein kinase-like (PK-like) 1 214 IPR011009 -
Seca4g08304 243 Gene3D Transferase(Phosphotransferase) domain 1 1 227 - -
Seca4g08304 243 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 226 - -
Seca4g08304 243 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 219 - -
Seca4g08304 243 SMART serkin_6 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08304 243 ProSiteProfiles Protein kinase domain profile. 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08304 243 PIRSF ILK 1 230 - -
Seca4g08304 243 Pfam Protein kinase domain 15 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08304 Seca-Chr4 197396354 197397606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08304 1 219 Receptor kinase-like Gene Family AT3G47090 38.222 1.49e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca4g08304 Pkinase 1.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08304 - - pop:18094240 399.438