Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08284 ATGACTAACCTCTCACACAAAACCCTCAACAACAACACCACCACCACACCCACCACCATGGTCAAGCGCTCACGCAAAAGCACCCCAAGAGACACACCTTCACAACGAAGAAGCTCAATCTACAGGGGTGTTACAAGGCATAGATGGACGGGTCGATATGAGGCACATTTGTGGGATAAGAATTGCTGGAATCAATCACAGAACAAGAAAGGAAGACAAGTGTTATTAGGGGCATATGATGATGAAGATGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAACTTTCCATTATCAAATTATCAAGACGAGCTTAAGGAGATGGAGGATCAATCAAAAGAGGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGGTTCTCTCGAGGAGTCTCAAAATACAGAGGTGTGGCAAGACACCATCACAACGGAAGATGGGAAGCTCGAATTGGCAGAGTCTTCGGCAACAAATATCTATACCTGGGAACTTACGCTACACAAGAAGAAGCGGCAACGGCATATGATATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTTACAAACTTTGACCTTAGTCGTTATATCAAATGGCTACGCCCTAAAACCCAAGACCAAGACAACCACCACCATGAAATCCCAAATAACAACCCTCAACCAAATAATCCCAATTTATCTGAAGAACTCCAATTAGGGTTTGTTTCCAACCAACTCAGCCCAAGCAGTAGCGAAATCACAACACCACGATCTGATGGTAATGGTGGCACTACTAGTAATTCTACAACATCTTCTTCTTCTGCATTGGGGCTTCTTTTACAATCATCAAAATTCAAGGAAATGCTAGAAAGGACTACTTCTTCAGCTGCTTCACCACCTTCAAAGTCAAACACTCCTCGTCGTAGTACATTTCCTGAAGATGTTCAAACATTTTTTGAAAGCCATGATGCTTCTGGAAGCGGAAGCTACACGGAGAGTGATGACGTCATATTTGGGGAGTTGAGCTCAATTGCTGCACCAATTTTTTCATTGTGA 1059 0.4363 MTNLSHKTLNNNTTTTPTTMVKRSRKSTPRDTPSQRRSSIYRGVTRHRWTGRYEAHLWDKNCWNQSQNKKGRQVLLGAYDDEDAAARAYDLAALKYWGQDTILNFPLSNYQDELKEMEDQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLRPKTQDQDNHHHEIPNNNPQPNNPNLSEELQLGFVSNQLSPSSSEITTPRSDGNGGTTSNSTTSSSSALGLLLQSSKFKEMLERTTSSAASPPSKSNTPRRSTFPEDVQTFFESHDASGSGSYTESDDVIFGELSSIAAPIFSL. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08284 352 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 PRINTS Ethylene responsive element binding protein signature 182 202 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 268 - -
Seca4g08284 352 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 SMART rav1_2 40 112 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 MobiDBLite consensus disorder prediction 222 275 - -
Seca4g08284 352 ProSiteProfiles AP2/ERF domain profile. 40 106 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 SUPERFAMILY DNA-binding domain 141 202 IPR016177 GO:0003677
Seca4g08284 352 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 MobiDBLite consensus disorder prediction 212 275 - -
Seca4g08284 352 FunFam AP2-like ethylene-responsive transcription factor 141 202 - -
Seca4g08284 352 FunFam AP2-like ethylene-responsive transcription factor 39 108 - -
Seca4g08284 352 Pfam AP2 domain 40 98 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 Pfam AP2 domain 141 192 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 CDD AP2 141 202 IPR001471 GO:0003700|GO:0006355
Seca4g08284 352 Gene3D AP2/ERF domain 40 108 IPR036955 GO:0003700|GO:0006355
Seca4g08284 352 Gene3D AP2/ERF domain 141 202 IPR036955 GO:0003700|GO:0006355
Seca4g08284 352 SUPERFAMILY DNA-binding domain 39 108 IPR016177 GO:0003677
Seca4g08284 352 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g08284 352 MobiDBLite consensus disorder prediction 290 313 - -
Seca4g08284 352 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08284 Seca-Chr4 196564665 196571575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08284 36 204 AP2-EREBP Transcription Factor Family AT5G57390 72.781 1.51e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca4g08284 AP2 4.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08284 K09285 - jre:109011037 434.491