Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08283 ATGCCATGCTTCTTCTTCTTCTTAATAGAACCTGCAAGTAATTTTGAAAACAACCAAGTTCAAATCATGATGAATGGTTCCCAAAAATCCTCAACTCCATACACCTCTCTGTATTCCAATCCCCTCAATAACGTCAACGAGCTCAGGCACTGTCGTAGTTGCAGCACCGATTATGGCCACTTACGCTTAGCCTCCACCAAAGGTGACACCTTTCACTTTGAAGATTTCAGGAATGATCATGACAACAAAGAAAACGCAAATGGGTCATCTTCTTCTCTGCCTAAACCCTTCTCAAAGTCCAAGTCTTTGTCCACAGACAGGGTTCTTAAGCCCACCTCACTCCAGTTCTGCATGCAAATGAATGACCCTCTTGATTCTCAACGTTCCTCCTCTTTGAATATTTGGGACTACTCTGACTCTGATGCTGCTCCTGCTTCCTCCTGGTCCACTTTGCCCAATAAGTCTTTGATCTGTAGACCCTTACCTATTGATATTGGAAGGTGTACTTGTGTTATTGTGAAGGAAGCAATGCCACAGGGACTATCTGGGGACAGTTTGTTCTCTCTTTACACCTACGAAGGTCAGGGACGGCAGAATAGGAAACTAGCTGTGGCCCAACACAAGCGGCGGAATGGGAGGTCTCAATTCATTGTAGCTCAGAATGTCAAAGGACTACTGTCCAATTCAGATGATAGTTTCCTTGGGACCGTAACAGCTAACCTCATGGGCTCAAAATACCACATTTGGGATCAGGGATATCGTCATAATTCTCATAGTAAACAACCAAAGCCACCTCTTGCTATTGTGAAGTATATACCTACAGTAGCAACATGTACAGGAAGTCACAGAAGCATCAAGGCATACATACCCAAGCATCAATCTATGTCACTCAAGAACACAGCCCAGGTACAACATATTAAAGGACTGCCAATGAATTGGGAGGGAAAATTGGACAAAGTCCATCAACTATACTCAAGGATTCCACTGTACAACAAGATTTCAAAGCAATTTGAGCTTGACTACAGAGATAAAGGAAGGACAGGACTTAGAGTCCAAAGATCAGTGAAAAATTTTCAACTGACTTTAGAGGAGAATGGGAAGCAGACCATCCTGCAGCTAGGGAGGGTGGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGCTGCACCGTATAG 1233 0.4315 MPCFFFFLIEPASNFENNQVQIMMNGSQKSSTPYTSLYSNPLNNVNELRHCRSCSTDYGHLRLASTKGDTFHFEDFRNDHDNKENANGSSSSLPKPFSKSKSLSTDRVLKPTSLQFCMQMNDPLDSQRSSSLNIWDYSDSDAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEAMPQGLSGDSLFSLYTYEGQGRQNRKLAVAQHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQGYRHNSHSKQPKPPLAIVKYIPTVATCTGSHRSIKAYIPKHQSMSLKNTAQVQHIKGLPMNWEGKLDKVHQLYSRIPLYNKISKQFELDYRDKGRTGLRVQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08283 410 MobiDBLite consensus disorder prediction 85 106 - -
Seca4g08283 410 SUPERFAMILY Tubby C-terminal domain-like 145 409 IPR025659 -
Seca4g08283 410 MobiDBLite consensus disorder prediction 75 106 - -
Seca4g08283 410 Pfam Tub family 159 403 IPR000007 -
Seca4g08283 410 Gene3D Tubby Protein; Chain A 153 403 IPR025659 -
Seca4g08283 410 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Seca4g08283 410 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Seca4g08283 410 PRINTS Tubby superfamily signature 233 257 IPR000007 -
Seca4g08283 410 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Seca4g08283 410 PANTHER TUBBY-RELATED 26 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08283 Seca-Chr4 196546886 196550473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08283 73 303 TUB Transcription Factor Family AT1G16070 51.220 3.64e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca4g08283 Tub 5.8e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08283 K19600 - rcu:8280277 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08283 4 196546886 196550473 Seca4g08283 4 196546886 196550473 ECH