Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08280 ATGGATCAAGTTTCTCTCAACAGTGAGCCAGTAGCAGATGGCGATGGCGATGCTGATGGTGATGGTGATGGATTTGAGTGTGAAAGTGAATTGGTCAATAATCAAAGTGGGATCATTGAAGGAAATAACCCTAACCCTATTCCTCCTGCCGTTGGAATGGAATTTGAGACCTATGAGGATGTATATTACTTCTATAATTGCTATGCTAAGGAACAGGGTTTTGGGGTTAGAGTAACAAATACCTGGTACAGGAAGAGTAAAGAACGTTACAGAGCAAAACTTAGTTGCAGCAGTGCAGGCTTCAAGAAAAGAAGTGAAGCGAATCGCCCTAGACCCGAAACTAGAACTGGTTGTCCTGCTATGATCAAGTTCAGGTTGATGGACTCCAAAAGGTGGAGGATTATAGAAGTTGAGCTTGACCACAATCACTTGATTAACCCAACCAGTGGAAAGTTTTATAAGTCTCATAAGCATATTGCTCTTGGGACCAAAAGAGCATTGCAATTAGATGCTGCTGCTGCTGCTGCTGAACAGGTTCAGAAAATTAGGATGTTTCGTACTGTGATTGTTGATGCTGAGCCTAATGCAAGTGTGGATGTTGATCAAGAGAAGTCCAAAATGAATCTTTACTCTAATCAATTGAAGCTAAAGAAAGGTGATGCTGAAGCAATTCTGAATTTTTTTAGTCGCTTGCAATTGGCAGATCCGGAATTCTTCTATGTTGCAGATATCAATGAGAGGGGATGCTTGAGGAATTTGTTCTGGGCTGATGCTAAGTCCAGAGTAGATTACTATTATTTTAATGATGTGGTTGTGATTGATACTACATGTTTGACAGGTGAATATCAAGTTCCCCTGGTTTTGTTCCTTGGATCAAACCACCATAAACAATCCATTTTGTTTGGTTGTGGATTGCTTGCTGGTGAAACCATTGAATCATATACATGGCTGTTTAGGGCATGGCTTACATGTATCTTAGGATGCCCCCCACAGGTTATCATTACCAACCAATGTGGAATCTTGCAAACTGTGGTTGCTGATGTTTTTCCTAGAGCTACACACTGTCTTTGCTTATTTAATATCATGCAAAAAATACCAGAAAAGCTAGGAGCATCTCTAGAATGTGAAGCAATTAGTGCAGCTTTGAACAGAGCAGTTTATTCTTCTCTGAGGGCTGAGGAATTTGAAGCAACATGGGAGGACATGATGAAAAGCAATGAAATTACAGGCCATAAATGGCTTCAATCATTATATGAGGATCGGAAACGGTGGGTTCCAGTTTATCTGAAGGAATTTTTCTTGGCAGGAATGTTTCCAATCCAACCAAGTGATGTTGTATCATTTTTCTTTGATGACTACCTTAATGAACAAACTTCTTTAAAAGAATTTTTAGAAAAATATGATCAGGCTTTACAGACAAAGCGACAACTTGAGGCAATGGCAGATTTGGACTCAAAATCTTCTAGCTTTATGCCAAAATCAAGGTCTTACTTTGAGTTGCAGGTGTCAAAGTTATACACCAATGAAATATTAAGAATGTTTGAAAGGGAAGTGGAAGGAATGTTTTCTTGCTTTAGCACCAGACAGATAAATGTTGATGGGCCAGTCATCACATACATTGTTCAGGAACAATTTGAAGTTGAGGGAAATCAGAGAGATGCAAGGGAATATGAAGTATATTACAATGGAGCTGAGGTGGAGGTCTTCTGCATTTGTGGTTTGTTCAATTTCAGAGGCTACTTGTGTAGGCATGCTTTATTTATCTTAAGCCAAAATGGCATAAATGAGATCCCACCTCAGTACATTCTTTCACGATGGAGAAAAGATATGAAGCGTACCAATGTTTATGATCACAACTGCAGTGGCATTGATATTAATAACCCAGTTCATAGGTATGACCATTTATACAGACAGGTTGTGAAGGTTGTGGAGGAAGGTAGGAAATCCCATGACCATTACAAGACTGCAGTACAAGCATTGGAAGATGTATTGAACAAACTCCATCTTGTAAATGTAGATGATCTTCCAATATAG 2034 0.3923 MDQVSLNSEPVADGDGDADGDGDGFECESELVNNQSGIIEGNNPNPIPPAVGMEFETYEDVYYFYNCYAKEQGFGVRVTNTWYRKSKERYRAKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDSKRWRIIEVELDHNHLINPTSGKFYKSHKHIALGTKRALQLDAAAAAAEQVQKIRMFRTVIVDAEPNASVDVDQEKSKMNLYSNQLKLKKGDAEAILNFFSRLQLADPEFFYVADINERGCLRNLFWADAKSRVDYYYFNDVVVIDTTCLTGEYQVPLVLFLGSNHHKQSILFGCGLLAGETIESYTWLFRAWLTCILGCPPQVIITNQCGILQTVVADVFPRATHCLCLFNIMQKIPEKLGASLECEAISAALNRAVYSSLRAEEFEATWEDMMKSNEITGHKWLQSLYEDRKRWVPVYLKEFFLAGMFPIQPSDVVSFFFDDYLNEQTSLKEFLEKYDQALQTKRQLEAMADLDSKSSSFMPKSRSYFELQVSKLYTNEILRMFEREVEGMFSCFSTRQINVDGPVITYIVQEQFEVEGNQRDAREYEVYYNGAEVEVFCICGLFNFRGYLCRHALFILSQNGINEIPPQYILSRWRKDMKRTNVYDHNCSGIDINNPVHRYDHLYRQVVKVVEEGRKSHDHYKTAVQALEDVLNKLHLVNVDDLPI. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08280 677 ProSiteProfiles Zinc finger SWIM-type profile. 557 593 IPR007527 GO:0008270
Seca4g08280 677 SMART 26again6 568 595 IPR006564 GO:0008270
Seca4g08280 677 Pfam MULE transposase domain 270 364 IPR018289 -
Seca4g08280 677 Coils Coil 460 480 - -
Seca4g08280 677 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 668 IPR031052 GO:0006355
Seca4g08280 677 Pfam SWIM zinc finger 557 590 IPR007527 GO:0008270
Seca4g08280 677 MobiDBLite consensus disorder prediction 1 25 - -
Seca4g08280 677 Pfam FAR1 DNA-binding domain 64 146 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08280 Seca-Chr4 196486809 196489318 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g08280 MULE 3.3e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08280 - K17604 gmx:100796267 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08280 4 196486809 196489318 Seca4g08280 4 196486809 196489318 ECH