Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08278 ATGAAGCTCACTGTGAAGACTTTGAAGGGAAGCCATTTCGAAATCAGGGTTCAGCCCTCCGATTCTATAATGGCAGTGAAAAAAAACATTGAAGACGTCCAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGATAATAAGGTTTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGTAAAACCTTGGGATCTGCAGGCACTTCCTCAACTCAGCCTGCTAGCAATCCACCTACAACTGCATCAACGCCGAGCTCTACACCTCCCGTACAAACTCGGTCTGCAAACAACGTTTCATCTGCAACAGATGTTGCGACTACGAAGTATGGCTTTTATTTCTGTTCATTATGCCACTATTCACTGCCTTTAAGTAGTTTTTGTATGATGAAGGCTATCAATAAGCTATACTTTGAATCGTTATTAGTGCATTTTGAGAGCCAAAATGTAATTGTTGTAATTTGA 513 0.4016 MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGTSSTQPASNPPTTASTPSSTPPVQTRSANNVSSATDVATTKYGFYFCSLCHYSLPLSSFCMMKAINKLYFESLLVHFESQNVIVVI. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08278 170 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Seca4g08278 170 Gene3D - 1 80 - -
Seca4g08278 170 FunFam UV excision repair protein RAD23 1 80 - -
Seca4g08278 170 CDD Ubl_Rad23 1 74 - -
Seca4g08278 170 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Seca4g08278 170 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 114 - -
Seca4g08278 170 MobiDBLite consensus disorder prediction 81 115 - -
Seca4g08278 170 SMART ubq_7 1 75 IPR000626 GO:0005515
Seca4g08278 170 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08278 Seca-Chr4 196474257 196479028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08278 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 8.12e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08278 K10839 - gmx:100804038 191.815