Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08275 ATGGACAAAGTTAATGTTGTGGGCTTTGAAGCCCCAACAGCTCAATTGATTGGTTGGTTGGAAAATGGAAAAGGAGAACGCACCGTTATCTCTGTGGTAGGAATGGGAGGGCAGGGAAAAACCACTCTTGTCAGGAAAATTTTTGGCAACAAGAAGGTGATTGCGCCCTTTGATTGTTGTGCATGGATCACAGTATCTCGGTCCTATGATGCAGAAAGGTTGTTGAGGGACATGTTGCAAAAGTTTTACAAATATCGAAACGAGTCTCCTCCTCACGGTATTTCAACAATGGATCGAGAGTCATTGATAGAAGAAGTAGGAAACTACTTGCAAGAGAAGAGGTATGTTGTCTTCTTTGATGATGTATGGCATACACAATTTTGGGAAGAAATTGAATTTGCTGTAATTGATAATAAAATTGGAAGTAGAATACTTATCACAACAAGAAATTTGGATGTTTCCAAGTCTTGTATGAAATCTTCTCTTGTTAAAGTGCATCAACTGCAGCCTTTAACTCTAGAAAAATCTTTGGAGTTGTTTTGTAAGACGACATTCCATAACTTGATTGGACGTTGCCCAAAAGAACTCGTGAACATATCTTCTGAAATTGTTGAAAAATGTAAGGGTTTACCTCTGGCAATTGTGTCCATTGGTGGTGTTTTATCTGGTAGAAACAAAGATTCATTTGAATGGAAAAAGTTTAGTCAAAATCTAAGTGCAGAGGTCATGAGGAAGCTTTTAGGTTTCAGTTATGATGATTTGCCTTACTATCTTAAGTCTTGCTTCTTGTATTTTGGGATGTATCCCGAAGACTATGAAGTTAGATCCAAGAGACTGATTCGGCATTGGATAGCGGAAGGGTTTGTCAAAAAGGAAATAGGGAAGAACACTTTGGAGGATGTTGCTGAAGGATATTTAATAGAGTTGATAAGTAGAAATTTGGTGCAAGTATCTTCAGTTTACATTGAGGGCAAAGTTAAAGCATGTTGCGTTCATGACCTATTACGTGAGATGATCCTTAGGAAATGTAAGGATTTAAGTTTTTGCCATTATGTTAGTGAGGATGATCAGTCAAAGTCAAGCTTAAGTGGGATAAGTCGGCGTCTATCAATAGCAACCACTTCTAGAGATTTAACTAGAAACATTGAAAGCTCTCCAATTCGGTCATTGTTGTTTTACACAGATCAGGAGATTGCAGTACCTGAGAACCATGTAAAGAGAATCTCTACAAAATACATGTTAAAGGTACTTGATTTTGAAGATGCTCGATTGAAGCATGTTCCTCAAAATTTGGGGAATTTAATCCACTTGAAGTATTTAAGCTTCAAACATAATGGAGAAATAGAAATCCTTCCAAAATCTATTGGTAAGCTCCAAAACCTTGAGACCGATTGTTGTATTGGAGGCATAGAATCCCTGCAAACGCTAAATGTTGTGCAAATAAATGGTGAAGATGGAATAGAGTTAATTAGAGAGCTTGGAATGCTAAGGCAGTTAAGGGAGTTGGGCTTGCGGTATGTTCAGAATGAACACGGAGAAGCTCTATGTTCTTCAATAAATGAGATGCAACACTTGGAGAAACTATTTATTGATTCAAGTGATGAAGTCATTGATTTGAATTGCATTTCATCCCCACCTATGATGCTTCGAAGGCTTAGCCTAAGCGCCATTTTAAATAAGTTTCCAAAGTGGATTCCAAAGCTTGAAAATCTTGTTAAGTTGACCTTGAAATGCTCGAACTTAGCTGATGATCCATTGAAATCACTACAAAATATGCCAAATTTGTTGTCCCTCGACATTTGGTATCATGGTTATACAGGCAAAAGTATACATTTTCAAGATGGAGGACGTTTAGAAAACTTGAACTCAATCATTATTGATGGAGGAGCATTGCAATATTTGGAAATGTTCTTCTTAAGCGAAATCCTCCAACTCAAGATACTCACTGGCATCCAGCACTTAAAGAAACTTGAACATCTCCTCATTGATCGTATGCCATCGAACATTGAGCAGAGCATTACTCTCCATGCACAAGGGCACCAAATCATTAAGCATGTGTCGCTCATACAAATTGAAAACTATTATGAAAGAATCACCTATCGCTTAGGAGAAGTCGTACAACGTTCAAAGATAGCCTTGGACATATGA 2148 0.3771 MDKVNVVGFEAPTAQLIGWLENGKGERTVISVVGMGGQGKTTLVRKIFGNKKVIAPFDCCAWITVSRSYDAERLLRDMLQKFYKYRNESPPHGISTMDRESLIEEVGNYLQEKRYVVFFDDVWHTQFWEEIEFAVIDNKIGSRILITTRNLDVSKSCMKSSLVKVHQLQPLTLEKSLELFCKTTFHNLIGRCPKELVNISSEIVEKCKGLPLAIVSIGGVLSGRNKDSFEWKKFSQNLSAEVMRKLLGFSYDDLPYYLKSCFLYFGMYPEDYEVRSKRLIRHWIAEGFVKKEIGKNTLEDVAEGYLIELISRNLVQVSSVYIEGKVKACCVHDLLREMILRKCKDLSFCHYVSEDDQSKSSLSGISRRLSIATTSRDLTRNIESSPIRSLLFYTDQEIAVPENHVKRISTKYMLKVLDFEDARLKHVPQNLGNLIHLKYLSFKHNGEIEILPKSIGKLQNLETDCCIGGIESLQTLNVVQINGEDGIELIRELGMLRQLRELGLRYVQNEHGEALCSSINEMQHLEKLFIDSSDEVIDLNCISSPPMMLRRLSLSAILNKFPKWIPKLENLVKLTLKCSNLADDPLKSLQNMPNLLSLDIWYHGYTGKSIHFQDGGRLENLNSIIIDGGALQYLEMFFLSEILQLKILTGIQHLKKLEHLLIDRMPSNIEQSITLHAQGHQIIKHVSLIQIENYYERITYRLGEVVQRSKIALDI. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08275 715 Gene3D Ribonuclease Inhibitor 386 695 IPR032675 -
Seca4g08275 715 PANTHER DISEASE RESISTANCE PROTEIN RP 16 660 IPR044974 GO:0006952
Seca4g08275 715 PRINTS Disease resistance protein signature 109 123 - -
Seca4g08275 715 PRINTS Disease resistance protein signature 207 221 - -
Seca4g08275 715 PRINTS Disease resistance protein signature 29 44 - -
Seca4g08275 715 Gene3D - 252 343 IPR036388 -
Seca4g08275 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 265 IPR027417 -
Seca4g08275 715 FunFam Probable disease resistance protein At1g61300 1 161 - -
Seca4g08275 715 Pfam NB-ARC domain 12 253 IPR002182 GO:0043531
Seca4g08275 715 SUPERFAMILY L domain-like 381 673 - -
Seca4g08275 715 FunFam Probable disease resistance protein At1g63360 251 341 - -
Seca4g08275 715 Gene3D - 1 166 IPR027417 -
Seca4g08275 715 Gene3D - 171 251 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08275 Seca-Chr4 196452543 196454840 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08275 2 238 WRKY Transcription Factor Family AT4G12020 25.514 6.32e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08275 K13457 - gmx:100819372 707.983