Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08267 ATGCATACTTTGATGGATTCAAAAAGTGCAGTGTTGGTGGTGATCTTTGTTTGGATTTCAGTGTGTTCTCATGGTGCTGTTATCGTATCAAAGGATGGGAGTGGAGATTACACAAGTGTGGGTGAAGCTATTAACAAAGCACCAGATTTGAGTGACAAACCTTACACCATTCGCGTTCGAGCTGGTACTTATGAAGAATATGTCCTCATTCCCGCTGAGAAGACTAATATTAAGCTCATTGGAGATGATCCTCGCCACACAAAAATACTTGGTTATCAAAAAGGTTCCACCATAGACATTCGTGGAGAAGGATTCATGGCCAAAAACATAGGATTCATGAACTCAGCAGTGCTAAACGCAAGCGCAGCAGTGGCGGTTCGCAACGAGGCAAACAAGAGCATCTTCTTCCAATGTATCATCGAAGGCTTCCAAGACACGTTATGGGCTGTTTCGGGTCTTCAATTCTACAAAAACTGTGACATATACGGCACCGTTGATTTCATCTACGGCAACGCAGCAGCAGTTTTTCAAGACTGTAACATCTACGCGCGGTACCGAGAGTACGTGACTTTCACTGCTCAGTCACGTGAGGGTGCACATGAGAACACAGGGTTTACATTCCAAAGGTGCAAGTTCACCATGTCCCCTGAGGATTCAGATAGAAGATCAGAGGTTCATGCTACATTGGGGCGTCCCTGGAGGGCTTATTCTAGAGTGGCTATATTACAGTGTTACATTGATTCTATAGTGGATCCTCAAGGTTGGGAACAAATGTCTCACCAACCCACTGATAAGGTTACGTATGTGGAGTTTAGGAATGTTGGGCCTGGATCTAAAACTGATGGGAGGGTTAATTGGCCTGGTGTTAGACTCCTTCATTACCCAATTCAAGCAGTGCCTTTTACTGCTTCTCGTCTTTTGGATGCTGATTCGTGGATTCCCTCCAGGGGGGTTCCCTATGATAATGGACTATAA 975 0.4482 MHTLMDSKSAVLVVIFVWISVCSHGAVIVSKDGSGDYTSVGEAINKAPDLSDKPYTIRVRAGTYEEYVLIPAEKTNIKLIGDDPRHTKILGYQKGSTIDIRGEGFMAKNIGFMNSAVLNASAAVAVRNEANKSIFFQCIIEGFQDTLWAVSGLQFYKNCDIYGTVDFIYGNAAAVFQDCNIYARYREYVTFTAQSREGAHENTGFTFQRCKFTMSPEDSDRRSEVHATLGRPWRAYSRVAILQCYIDSIVDPQGWEQMSHQPTDKVTYVEFRNVGPGSKTDGRVNWPGVRLLHYPIQAVPFTASRLLDADSWIPSRGVPYDNGL. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08267 324 PANTHER PECTINESTERASE 26 314 - -
Seca4g08267 324 Pfam Pectinesterase 27 309 IPR000070 GO:0030599|GO:0042545
Seca4g08267 324 SUPERFAMILY Pectin lyase-like 21 322 IPR011050 -
Seca4g08267 324 Gene3D - 23 324 IPR012334 -
Seca4g08267 324 FunFam Pectinesterase 24 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08267 Seca-Chr4 196359457 196362857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08267 26 324 Carbohydrate Esterase AT2G26440 40.064 7.64e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08267 K01051 - gmx:102665195 476.863