Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08266 ATGGCAATTGAGAGCGATCAACAACAAAAGGATTTCATTTTCAGGTCTAAGCTCTCAGAAATCTACATCCCAAAACACCTTCCCCTGCATTCTTATTGCTTTGAGAATCTCTCTGAGTTTGGTTCACACCCTTGTTTGATCAATTCCCCAAATGGGGTTGTCTACACCTATTCCGATGTGGAACTCACAGCTCGAAAAGTTGCCTCAGGACTCAACAAATTGGGTGTCCAAAAGGGTGATGTGATCATGATCCTCCTCCAAAATTCCCCTGAATTTGTCTTCTCCTTTTTAGGTGCTTCTTATAGAGGTGCCATGGCCACTGCCGCAAACCCATTTTTCACACCTTCTGAGATTGCAAAACAAGCAAAAGCCTCAAATGCAAAATTGCTCATAACACAAGCGAGTTACTATGAGAAAGTGAAGGATTTGGATGTGAAGTTGGTGTTTGTGGACTCTCCCCCAGAAGGGCATTTGCATTTCTCTGAATTGAGTGAATCAGATGAGAATGAATTGCCAGAGGTGAAAATTGAGCCTAATGATGTGGTGGCACTGCCCTATTCATCTGGGACAACGGGTCTTCCAAAAGGGGTGATGTTAACACATAAAGGGTTGGTGACTAGTATTGCTCAACAAGTGGATGGGGATAACCCAAATCTCTATTACCATTCCCAGGATGTTATACTATGTGTCCTTCCACTCTTTCACATATATTCTCTCAATTCTGTTTTGCTTTGTAGCCTTAGAGCCAAAGCTACCATTTTGCTCATGCCCAAGTTTGATATCAATGCCTTGTTGGCACTTATTCACAAACACAGGATCACAATTGCACCTGTTGTCCCACCAATTGTTTTGGCAATTGCCAAGTCACCAGATCTTCATAAGTATGACCTATCTTCTATTAGGGTCTTGAAATCTGGCGGTGCTCCTCTTGGTAAAGAACTTGAAGACACTCTTAGGGCCAAATTCCCCAATGCCAAACTTGGTCAGGGATATGGAATGACTGAGGCAGGACCAGTTCTAACAATGTCCTTAGCATTTGCTAAAGAACCAATGGATGTAAAACCAGGTGCATGTGGAACAGTTGTGAGAAATGCAGAGATGAAGATTGTGGACCCTGAAACTGGCAATTCTTTACCTCGAAACCAGCCCGGTGAAATTTGCATTAGAGGAGACCAGATCATGAAAGGTTATCTAAATGATCCAGAGGCTACGAAGAGAACCATAGACAAAGAGGGTTGGTTACATACCGGTGACATTGGCTACATCGATGATGATGATGAGTTATTCATCGTTGATAGGTTGAAGGAATTAATCAAATACAAAGGATTTCAGGTGGCTCCAGCTGAACTTGAAGCTCTTCTTCTCTCTCATCCTAAGATCTCTGATGCTGCTGTGGTTCCAATGAAGGATGAAGCAGCTGGAGAGGTGCCTGTTGCTTTTGTGGTGAGATCAAATGGTCACACTGACGTAACCGAGGATGAAATTAAACAGTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCGAGTATTTTTCATTGATGCAATTCCCAAGTCACCGTCAGGGAAAATCTTGCGTAAGGATCTGAGAGCAAAGTTAGCAGCAGGTGTACCAAATTCAAATTAA 1632 0.4246 MAIESDQQQKDFIFRSKLSEIYIPKHLPLHSYCFENLSEFGSHPCLINSPNGVVYTYSDVELTARKVASGLNKLGVQKGDVIMILLQNSPEFVFSFLGASYRGAMATAANPFFTPSEIAKQAKASNAKLLITQASYYEKVKDLDVKLVFVDSPPEGHLHFSELSESDENELPEVKIEPNDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGDNPNLYYHSQDVILCVLPLFHIYSLNSVLLCSLRAKATILLMPKFDINALLALIHKHRITIAPVVPPIVLAIAKSPDLHKYDLSSIRVLKSGGAPLGKELEDTLRAKFPNAKLGQGYGMTEAGPVLTMSLAFAKEPMDVKPGACGTVVRNAEMKIVDPETGNSLPRNQPGEICIRGDQIMKGYLNDPEATKRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPKISDAAVVPMKDEAAGEVPVAFVVRSNGHTDVTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVPNSN. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08266 543 Gene3D - 435 537 IPR045851 -
Seca4g08266 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 15 435 - -
Seca4g08266 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 533 - -
Seca4g08266 543 Gene3D - 6 434 IPR042099 -
Seca4g08266 543 ProSitePatterns Putative AMP-binding domain signature. 184 195 IPR020845 -
Seca4g08266 543 FunFam 4-coumarate--CoA ligase 2 436 538 - -
Seca4g08266 543 Pfam AMP-binding enzyme C-terminal domain 449 525 IPR025110 -
Seca4g08266 543 Pfam AMP-binding enzyme 37 440 IPR000873 -
Seca4g08266 543 SUPERFAMILY Acetyl-CoA synthetase-like 19 537 - -
Seca4g08266 543 CDD 4CL 23 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08266 Seca-Chr4 196351869 196357656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08266 1 503 Monolignol Biosynthesis Gene Families AT1G51680 70.485 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08266 K01904 - gmx:547944 909.057