Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08263 ATGGGTTCTGTGTCTGGAGAGGAGAAGATGGACCTCGATTTTGATGAGGAGATTCCCTTAAGCGCCACATCATCTGCTTCTAAAGTACATCCTTTCAGTTTCGAGACAAGAGTTGCTTTGCCCAAATCATCCATCTTAAACCTCTTAAGGACGAGACGAATCAGCAGGAGTATATATGTTGTCTTAATTAAAGCCAAGATCAACGCCTTGCTACCTTTTGGTCCATTAGCCATATTGCTACATTACCTAACGGGAAAACATGGATGGGTGTTCTTCTTCACATTATTAGGTATTACTCCTTTGGCAGAACGTCTGGGTTATGCTACTGAGCAGCTTGCGTTCTACACAGGACCGACAGTTGGGGGTCTACTCAATGCCACATTTGGAAATGCAACTGAAATGATTATATCAATTTATGCATTAAAAAGCGATATGATTAGGGTTGTTCAACAGTCTTTACTTGGCTCAATATTATCAAATATGCTTCTAGTTCTTGGGTGTGCATTCTTTACTGGTGGGATTGTCCACCACCAAAAGGTTCAGGTTTTCAATAAGGCAGCTGCTGTTGTCAATTCTGGGTTGCTGTTGATGGCTGTAATGGGAATATTATTTCCCGCTGTTCTTCACTTTACTCATTCAGAGGTTCATCTTGGGAAGTCGGTGTTATCTCTATCAAGATTTAGCAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAAAAGTCAGCAAAATTCTTATAGTCCAGTTAATGAGGAAGTAGATACAAGTGAAAATTCCGATGAAGAGGAAGAAATTGAATTAACTCAATGGGAAGCGATAATCTGGCTTGCTATTTTGACAGCATGGGTATCTGTATTGTCTGGATACCTTGTGGATGCCATAGAGGGAGCATCTGAGTCATTGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCTGTGAAGGACAAGCTTGATATCACAATTGGAGTTGCTGTTGGATCGTCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGTATGTGATTTCTTACATGCCCTTATGAATTGTGTTGATAGAAGTTGTTAA 1239 0.4027 MGSVSGEEKMDLDFDEEIPLSATSSASKVHPFSFETRVALPKSSILNLLRTRRISRSIYVVLIKAKINALLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHQKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCIMLVAYASYLFFQLKSQQNSYSPVNEEVDTSENSDEEEEIELTQWEAIIWLAILTAWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQVCDFLHALMNCVDRSC. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08263 412 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 50 399 IPR004713 GO:0006812|GO:0008324|GO:0016020
Seca4g08263 412 FunFam Vacuolar cation/proton exchanger 118 257 - -
Seca4g08263 412 Pfam Sodium/calcium exchanger protein 278 395 IPR004837 GO:0016020|GO:0055085
Seca4g08263 412 Pfam Sodium/calcium exchanger protein 89 244 IPR004837 GO:0016020|GO:0055085
Seca4g08263 412 NCBIfam calcium/proton exchanger 59 396 - -
Seca4g08263 412 FunFam Vacuolar cation/proton exchanger 265 408 - -
Seca4g08263 412 Gene3D - 264 405 IPR044880 -
Seca4g08263 412 Gene3D - 118 258 IPR044880 -
Seca4g08263 412 NCBIfam calcium/proton exchanger 70 395 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08263 Seca-Chr4 196327963 196339356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08263 14 396 Antiporters AT3G13320 69.666 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08263 K07300 - gmx:100806000 634.795