Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g08260 | ATGACCAAACCAATGGAACAGACAGCAGTTTCTCAAATTAATGTTCTTGTCCTCTACCTTTCTACTTTCTTCTCTAAGCCCCAGAAGCCAAGACACCTCATTTCCCATTGCATCGTGCTTCTTCTTGATGCTTGTAACCTAATCTGCAACCAAGATGGGGTGACTCTCTTATCACTCATGAGGCACTGGACATTCGTGCCTCATTCCATAAACTCCACTTGGAATGCCTCTGATTCCACACCATGCTCTTGGGAAGGAGTTAAATGTGACAATGCCCACCATGTGGTTTCCCTTAACCTCACTGGTTATGGGATTTCTGGTCAACTGGGACCTGAAATTGGAAATTTTACTTGGCTAAAGTCCTTAGACCTTACTGCTAACAATCTTAGTGGCCCAATACCTGATGCCTTGAAAAACTTGCAAAAGCTCAAGTATATCAGCCTTTCTAGTAATCTACTACTGAGTGGTGAAATTCCAGATTCCTTGACTCAAATCCCTGAACTATATTTTGTTGATCTGTCTTATAACAGTTTAACTGGTTCCATCCCCACAAGTATTGGCAACATGACTGAACTCACATACTTGTATCTTCAGTATAACCAGTTGTCTGGGATAATTCCCTCATCCATTGGCAACTGCAGGAAATTGCAAGACTTGGAATTGGATAATAATAAATTGGAGGGTGTCCTGCCTCAGAGTCTAAACAATCTTAGTGATCTTGTTTATTTTAATGTGGCCCACAATAGTCTTAGGGGCACCATTCCATTGGGTTCTGGCAGTTGTAGAAATTTAGACTTTTTGGATCTCTCATTCAATGTGTTTAGTGGAGGCCTTCCCTCAGGCTTGGGGAATTGTAGTAGTTTATCACAATTTGCTGCTGTGAACTGTAACTTGGTTGGAAGTATTCCATCTTCCTTTGGTCTACTAACCAAGCTTTCTATTTTATACCTTCCTGAGAACCATTTATCTGGAAAAATACCTCCAGAAATTGGTAACTGCAAGTCTTTGAATGAGTTACAGTTGTATACCAACCGACTTGAGGGAGAGATTCCAAGTGAACTGGGAAAACTGAGTCAACTACAGGACCTTGAATTGTTTTCCAATCAATTGAGTGGTGAAATTCCACTTAGCATTTGGAAGATTCAAAGCCTTGAGTATCTCCTTGTGTATAATAATAACCTTTCTGGGGAACTGCCTTTGGAGATGACAGAGCTGAAGCAACTGAAAAATATCTCATTGTTTAACAACCAGTTCTCTGGTGTCATACCTCAAAGCTTGGGACTTAATAGCAGTCTACTGCAATTAGACTTTACAAATAATAAGTTCACTGGCAACCTTCCACCAAATCTTTGTTTTGGCAAGAAGTTGAGCATACTGGTTATGGGCATCAATCAACTTCAAGGTAGCATACCTCCTGATGTTGGAAGGTGTACAACTCTTAGAAGGGTAATTCTTAAACAAAACAACTTTACTGGGCCTCTTCCTGAATTTGAAAGCAACCCCAATCTTACATTTATGGATATCAGCAACAACAAAATCAATGGATCCATTCCATCAGGTTTGGGAAACTGCACAAATCTCACTGACTTAATTATGTCCAGGAACAAATTTACTGGGCTTATACCCTCAGAGCTAGGAAACCTTGTGAATCTTCGGACTCTGAATCTTGCTCACAACAACTTAGAAGGTCCTTTGCCATTTCAGCTCTCAAACTGTACCAAAATGGACAAGTTTAATGTGGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTTTGCAGAGCTGGACAGGGATAAACACATTAATTTTAAGTGAGAACCATTTTAGTGGGGGCATTCCAGCTTTCTTGTCAGGATTTAAACAGCTTTCTGAACTACAACTTGGTGGCAATAGGTTTGGAGGCAGAATTCCTGGATCGATTGGAGCATTGCAGAATTTGATCTATGGGTTGAATCTAAGTTCTAATGGGCTGATAGGTGATCTTCCTGTAGAAATTGGAAACCTGAAAACTTTGCAAACACTGGATCTATCTCAGAACAATTTGACAGGAAGCATAGAAATTCTTGGTGAACTCCCTTCTTTAGTTGAAATCAATATTTCAAACAATTCTTTTCATGGTCCTGTACCAAAGATGCTAATGAAGTTGCTCAATTCTCCCTCATCATCATTTTCGGGGAATCCTGGGCTATGTATCAGTTGTTCACCATCTGATGGCTCTGGTTGCACTGAAAGCAGCTATCTAAAACCATGTGATAACAAATCAACTAATCACAAAGGTCTCAGTAAAGTTGCAATTGTGATGATAGCTCTTGGATCCTCAATACTTGTCATTTTGTTGTTGCTGGGATTAGCTTACTATTTTGTTTTTGGAAGAAAATCTAAGCAGGAAGTCCATATCTCTGCTAATGAGGGTTCTTCGCCCCTTCTTAACAAAGTCATGCAGGCTACAGAAAACCTAAATGATCAGTATATTATTGGCAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTGGTAGGTCCAGACAAAGCTTTTGCTGTAAAGAAGCTAGGATTTGCTGCCAGCAAAGGTAAGAACTTGAGCATGGTCAGAGAAATTCAAACCCTTGGAAAAATTAGGCATCGAAATCTGGTTAAATTGGAAGACTTTTGGTTGAGAAAAGATCATGGTCTAATTTTGTATAACTACATGCCAAATGGAAGCCTTCATGATGTTTTGCATGAAAAGAATCCACCACCATCCTTAGAATGGAGTGTTCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTTCATTATGACTGTGATCCTCCCATAGTGCACCGCGACATCAAACCAAAAAATATACTTCTAGACTCTGATATGGAGCCTCACATAGCTGACTTTGGTATTGCCAAACTTTTGGATCAGTCTTCTACTTCAAATCCTTCCATATCTGTGCCGGGTACAATTGGTTACATAGCACCAGAGAATGCTTATGCAACAGCAAATAGTAGGGAGTCTGATGTATACAGTTACGGGGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAGGCAACAGATTCCTCATTTATGGAGGGTACTGACATAGTGGGTTGGGTTAGATCTGTATGGAGTGAAACAGGAGAAATTAATCAAATTGTTGATTCAAGCCTTGCAGGGGAATTTCTAGATACCCATATAATGGAAAAAGTTACCAAAGTGCTCATGGTGGCTTTAAGATGTACTGAGCAAGATCCACGCAAGAGACCCACAATGACAGATGTTGTCAAGCAATTATCAGATGCTAATCCACAAGCACGGACAAGAAGTAAGAAGGGCTAG | 3333 | 0.4011 | MTKPMEQTAVSQINVLVLYLSTFFSKPQKPRHLISHCIVLLLDACNLICNQDGVTLLSLMRHWTFVPHSINSTWNASDSTPCSWEGVKCDNAHHVVSLNLTGYGISGQLGPEIGNFTWLKSLDLTANNLSGPIPDALKNLQKLKYISLSSNLLLSGEIPDSLTQIPELYFVDLSYNSLTGSIPTSIGNMTELTYLYLQYNQLSGIIPSSIGNCRKLQDLELDNNKLEGVLPQSLNNLSDLVYFNVAHNSLRGTIPLGSGSCRNLDFLDLSFNVFSGGLPSGLGNCSSLSQFAAVNCNLVGSIPSSFGLLTKLSILYLPENHLSGKIPPEIGNCKSLNELQLYTNRLEGEIPSELGKLSQLQDLELFSNQLSGEIPLSIWKIQSLEYLLVYNNNLSGELPLEMTELKQLKNISLFNNQFSGVIPQSLGLNSSLLQLDFTNNKFTGNLPPNLCFGKKLSILVMGINQLQGSIPPDVGRCTTLRRVILKQNNFTGPLPEFESNPNLTFMDISNNKINGSIPSGLGNCTNLTDLIMSRNKFTGLIPSELGNLVNLRTLNLAHNNLEGPLPFQLSNCTKMDKFNVGFNFLNGSLPSSLQSWTGINTLILSENHFSGGIPAFLSGFKQLSELQLGGNRFGGRIPGSIGALQNLIYGLNLSSNGLIGDLPVEIGNLKTLQTLDLSQNNLTGSIEILGELPSLVEINISNNSFHGPVPKMLMKLLNSPSSSFSGNPGLCISCSPSDGSGCTESSYLKPCDNKSTNHKGLSKVAIVMIALGSSILVILLLLGLAYYFVFGRKSKQEVHISANEGSSPLLNKVMQATENLNDQYIIGRGAHGVVYKALVGPDKAFAVKKLGFAASKGKNLSMVREIQTLGKIRHRNLVKLEDFWLRKDHGLILYNYMPNGSLHDVLHEKNPPPSLEWSVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPKNILLDSDMEPHIADFGIAKLLDQSSTSNPSISVPGTIGYIAPENAYATANSRESDVYSYGVVLLELITRKKATDSSFMEGTDIVGWVRSVWSETGEINQIVDSSLAGEFLDTHIMEKVTKVLMVALRCTEQDPRKRPTMTDVVKQLSDANPQARTRSKKG. | 1111 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g08260 | 1110 | ProSiteProfiles | Leucine-rich repeat profile. | 671 | 693 | IPR001611 | GO:0005515 | |
Seca4g08260 | 1110 | ProSiteProfiles | Protein kinase domain profile. | 820 | 1103 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g08260 | 1110 | Gene3D | Ribonuclease Inhibitor | 207 | 293 | IPR032675 | - | |
Seca4g08260 | 1110 | FunFam | Leucine-rich repeat receptor-like kinase | 53 | 155 | - | - | |
Seca4g08260 | 1110 | Gene3D | Phosphorylase Kinase; domain 1 | 790 | 896 | - | - | |
Seca4g08260 | 1110 | SUPERFAMILY | L domain-like | 75 | 451 | - | - | |
Seca4g08260 | 1110 | Pfam | Leucine Rich repeats (2 copies) | 671 | 703 | IPR025875 | - | |
Seca4g08260 | 1110 | MobiDBLite | consensus disorder prediction | 1083 | 1110 | - | - | |
Seca4g08260 | 1110 | Pfam | Leucine rich repeat N-terminal domain | 50 | 90 | IPR013210 | - | |
Seca4g08260 | 1110 | SUPERFAMILY | RNI-like | 410 | 719 | - | - | |
Seca4g08260 | 1110 | Gene3D | Transferase(Phosphotransferase) domain 1 | 897 | 1109 | - | - | |
Seca4g08260 | 1110 | SMART | serkin_6 | 820 | 1103 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g08260 | 1110 | Gene3D | Ribonuclease Inhibitor | 400 | 498 | IPR032675 | - | |
Seca4g08260 | 1110 | SUPERFAMILY | Protein kinase-like (PK-like) | 803 | 1096 | IPR011009 | - | |
Seca4g08260 | 1110 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 786 | 896 | - | - | |
Seca4g08260 | 1110 | Gene3D | Ribonuclease Inhibitor | 49 | 206 | IPR032675 | - | |
Seca4g08260 | 1110 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 158 | 257 | - | - | |
Seca4g08260 | 1110 | Gene3D | Ribonuclease Inhibitor | 499 | 736 | IPR032675 | - | |
Seca4g08260 | 1110 | Gene3D | Ribonuclease Inhibitor | 294 | 399 | IPR032675 | - | |
Seca4g08260 | 1110 | Pfam | Protein kinase domain | 824 | 1094 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g08260 | 1110 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 464 | 1090 | - | - | |
Seca4g08260 | 1110 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 942 | 954 | IPR008271 | GO:0004672|GO:0006468 | |
Seca4g08260 | 1110 | FunFam | Leucine-rich repeat receptor-like protein kinase PEPR1 | 457 | 740 | - | - | |
Seca4g08260 | 1110 | FunFam | Serine/threonine-protein kinase-like protein CCR4 | 897 | 1110 | - | - | |
Seca4g08260 | 1110 | Pfam | Leucine rich repeat | 166 | 226 | IPR001611 | GO:0005515 | |
Seca4g08260 | 1110 | Pfam | Leucine rich repeat | 501 | 561 | IPR001611 | GO:0005515 | |
Seca4g08260 | 1110 | ProSitePatterns | Protein kinases ATP-binding region signature. | 826 | 849 | IPR017441 | GO:0005524 | |
Seca4g08260 | 1110 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 258 | 456 | - | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 669 | 692 | IPR003591 | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 501 | 524 | IPR003591 | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 140 | 165 | IPR003591 | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 309 | 333 | IPR003591 | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 548 | 572 | IPR003591 | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 357 | 381 | IPR003591 | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 213 | 236 | IPR003591 | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 405 | 428 | IPR003591 | - | |
Seca4g08260 | 1110 | SMART | LRR_typ_2 | 189 | 212 | IPR003591 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g08260 | Seca-Chr4 | 196261384 | 196265284 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g08260 | 50 | 1107 | Receptor kinase-like Gene Family | AT1G73080 | 54.429 | 0.0 | 1083 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca4g08260 | Pkinase | 2.6e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g08260 | - | - | gmx:100778035 | 1635.54 |