Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08260 ATGACCAAACCAATGGAACAGACAGCAGTTTCTCAAATTAATGTTCTTGTCCTCTACCTTTCTACTTTCTTCTCTAAGCCCCAGAAGCCAAGACACCTCATTTCCCATTGCATCGTGCTTCTTCTTGATGCTTGTAACCTAATCTGCAACCAAGATGGGGTGACTCTCTTATCACTCATGAGGCACTGGACATTCGTGCCTCATTCCATAAACTCCACTTGGAATGCCTCTGATTCCACACCATGCTCTTGGGAAGGAGTTAAATGTGACAATGCCCACCATGTGGTTTCCCTTAACCTCACTGGTTATGGGATTTCTGGTCAACTGGGACCTGAAATTGGAAATTTTACTTGGCTAAAGTCCTTAGACCTTACTGCTAACAATCTTAGTGGCCCAATACCTGATGCCTTGAAAAACTTGCAAAAGCTCAAGTATATCAGCCTTTCTAGTAATCTACTACTGAGTGGTGAAATTCCAGATTCCTTGACTCAAATCCCTGAACTATATTTTGTTGATCTGTCTTATAACAGTTTAACTGGTTCCATCCCCACAAGTATTGGCAACATGACTGAACTCACATACTTGTATCTTCAGTATAACCAGTTGTCTGGGATAATTCCCTCATCCATTGGCAACTGCAGGAAATTGCAAGACTTGGAATTGGATAATAATAAATTGGAGGGTGTCCTGCCTCAGAGTCTAAACAATCTTAGTGATCTTGTTTATTTTAATGTGGCCCACAATAGTCTTAGGGGCACCATTCCATTGGGTTCTGGCAGTTGTAGAAATTTAGACTTTTTGGATCTCTCATTCAATGTGTTTAGTGGAGGCCTTCCCTCAGGCTTGGGGAATTGTAGTAGTTTATCACAATTTGCTGCTGTGAACTGTAACTTGGTTGGAAGTATTCCATCTTCCTTTGGTCTACTAACCAAGCTTTCTATTTTATACCTTCCTGAGAACCATTTATCTGGAAAAATACCTCCAGAAATTGGTAACTGCAAGTCTTTGAATGAGTTACAGTTGTATACCAACCGACTTGAGGGAGAGATTCCAAGTGAACTGGGAAAACTGAGTCAACTACAGGACCTTGAATTGTTTTCCAATCAATTGAGTGGTGAAATTCCACTTAGCATTTGGAAGATTCAAAGCCTTGAGTATCTCCTTGTGTATAATAATAACCTTTCTGGGGAACTGCCTTTGGAGATGACAGAGCTGAAGCAACTGAAAAATATCTCATTGTTTAACAACCAGTTCTCTGGTGTCATACCTCAAAGCTTGGGACTTAATAGCAGTCTACTGCAATTAGACTTTACAAATAATAAGTTCACTGGCAACCTTCCACCAAATCTTTGTTTTGGCAAGAAGTTGAGCATACTGGTTATGGGCATCAATCAACTTCAAGGTAGCATACCTCCTGATGTTGGAAGGTGTACAACTCTTAGAAGGGTAATTCTTAAACAAAACAACTTTACTGGGCCTCTTCCTGAATTTGAAAGCAACCCCAATCTTACATTTATGGATATCAGCAACAACAAAATCAATGGATCCATTCCATCAGGTTTGGGAAACTGCACAAATCTCACTGACTTAATTATGTCCAGGAACAAATTTACTGGGCTTATACCCTCAGAGCTAGGAAACCTTGTGAATCTTCGGACTCTGAATCTTGCTCACAACAACTTAGAAGGTCCTTTGCCATTTCAGCTCTCAAACTGTACCAAAATGGACAAGTTTAATGTGGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTTTGCAGAGCTGGACAGGGATAAACACATTAATTTTAAGTGAGAACCATTTTAGTGGGGGCATTCCAGCTTTCTTGTCAGGATTTAAACAGCTTTCTGAACTACAACTTGGTGGCAATAGGTTTGGAGGCAGAATTCCTGGATCGATTGGAGCATTGCAGAATTTGATCTATGGGTTGAATCTAAGTTCTAATGGGCTGATAGGTGATCTTCCTGTAGAAATTGGAAACCTGAAAACTTTGCAAACACTGGATCTATCTCAGAACAATTTGACAGGAAGCATAGAAATTCTTGGTGAACTCCCTTCTTTAGTTGAAATCAATATTTCAAACAATTCTTTTCATGGTCCTGTACCAAAGATGCTAATGAAGTTGCTCAATTCTCCCTCATCATCATTTTCGGGGAATCCTGGGCTATGTATCAGTTGTTCACCATCTGATGGCTCTGGTTGCACTGAAAGCAGCTATCTAAAACCATGTGATAACAAATCAACTAATCACAAAGGTCTCAGTAAAGTTGCAATTGTGATGATAGCTCTTGGATCCTCAATACTTGTCATTTTGTTGTTGCTGGGATTAGCTTACTATTTTGTTTTTGGAAGAAAATCTAAGCAGGAAGTCCATATCTCTGCTAATGAGGGTTCTTCGCCCCTTCTTAACAAAGTCATGCAGGCTACAGAAAACCTAAATGATCAGTATATTATTGGCAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTGGTAGGTCCAGACAAAGCTTTTGCTGTAAAGAAGCTAGGATTTGCTGCCAGCAAAGGTAAGAACTTGAGCATGGTCAGAGAAATTCAAACCCTTGGAAAAATTAGGCATCGAAATCTGGTTAAATTGGAAGACTTTTGGTTGAGAAAAGATCATGGTCTAATTTTGTATAACTACATGCCAAATGGAAGCCTTCATGATGTTTTGCATGAAAAGAATCCACCACCATCCTTAGAATGGAGTGTTCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTTCATTATGACTGTGATCCTCCCATAGTGCACCGCGACATCAAACCAAAAAATATACTTCTAGACTCTGATATGGAGCCTCACATAGCTGACTTTGGTATTGCCAAACTTTTGGATCAGTCTTCTACTTCAAATCCTTCCATATCTGTGCCGGGTACAATTGGTTACATAGCACCAGAGAATGCTTATGCAACAGCAAATAGTAGGGAGTCTGATGTATACAGTTACGGGGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAGGCAACAGATTCCTCATTTATGGAGGGTACTGACATAGTGGGTTGGGTTAGATCTGTATGGAGTGAAACAGGAGAAATTAATCAAATTGTTGATTCAAGCCTTGCAGGGGAATTTCTAGATACCCATATAATGGAAAAAGTTACCAAAGTGCTCATGGTGGCTTTAAGATGTACTGAGCAAGATCCACGCAAGAGACCCACAATGACAGATGTTGTCAAGCAATTATCAGATGCTAATCCACAAGCACGGACAAGAAGTAAGAAGGGCTAG 3333 0.4011 MTKPMEQTAVSQINVLVLYLSTFFSKPQKPRHLISHCIVLLLDACNLICNQDGVTLLSLMRHWTFVPHSINSTWNASDSTPCSWEGVKCDNAHHVVSLNLTGYGISGQLGPEIGNFTWLKSLDLTANNLSGPIPDALKNLQKLKYISLSSNLLLSGEIPDSLTQIPELYFVDLSYNSLTGSIPTSIGNMTELTYLYLQYNQLSGIIPSSIGNCRKLQDLELDNNKLEGVLPQSLNNLSDLVYFNVAHNSLRGTIPLGSGSCRNLDFLDLSFNVFSGGLPSGLGNCSSLSQFAAVNCNLVGSIPSSFGLLTKLSILYLPENHLSGKIPPEIGNCKSLNELQLYTNRLEGEIPSELGKLSQLQDLELFSNQLSGEIPLSIWKIQSLEYLLVYNNNLSGELPLEMTELKQLKNISLFNNQFSGVIPQSLGLNSSLLQLDFTNNKFTGNLPPNLCFGKKLSILVMGINQLQGSIPPDVGRCTTLRRVILKQNNFTGPLPEFESNPNLTFMDISNNKINGSIPSGLGNCTNLTDLIMSRNKFTGLIPSELGNLVNLRTLNLAHNNLEGPLPFQLSNCTKMDKFNVGFNFLNGSLPSSLQSWTGINTLILSENHFSGGIPAFLSGFKQLSELQLGGNRFGGRIPGSIGALQNLIYGLNLSSNGLIGDLPVEIGNLKTLQTLDLSQNNLTGSIEILGELPSLVEINISNNSFHGPVPKMLMKLLNSPSSSFSGNPGLCISCSPSDGSGCTESSYLKPCDNKSTNHKGLSKVAIVMIALGSSILVILLLLGLAYYFVFGRKSKQEVHISANEGSSPLLNKVMQATENLNDQYIIGRGAHGVVYKALVGPDKAFAVKKLGFAASKGKNLSMVREIQTLGKIRHRNLVKLEDFWLRKDHGLILYNYMPNGSLHDVLHEKNPPPSLEWSVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPKNILLDSDMEPHIADFGIAKLLDQSSTSNPSISVPGTIGYIAPENAYATANSRESDVYSYGVVLLELITRKKATDSSFMEGTDIVGWVRSVWSETGEINQIVDSSLAGEFLDTHIMEKVTKVLMVALRCTEQDPRKRPTMTDVVKQLSDANPQARTRSKKG. 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08260 1110 ProSiteProfiles Leucine-rich repeat profile. 671 693 IPR001611 GO:0005515
Seca4g08260 1110 ProSiteProfiles Protein kinase domain profile. 820 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08260 1110 Gene3D Ribonuclease Inhibitor 207 293 IPR032675 -
Seca4g08260 1110 FunFam Leucine-rich repeat receptor-like kinase 53 155 - -
Seca4g08260 1110 Gene3D Phosphorylase Kinase; domain 1 790 896 - -
Seca4g08260 1110 SUPERFAMILY L domain-like 75 451 - -
Seca4g08260 1110 Pfam Leucine Rich repeats (2 copies) 671 703 IPR025875 -
Seca4g08260 1110 MobiDBLite consensus disorder prediction 1083 1110 - -
Seca4g08260 1110 Pfam Leucine rich repeat N-terminal domain 50 90 IPR013210 -
Seca4g08260 1110 SUPERFAMILY RNI-like 410 719 - -
Seca4g08260 1110 Gene3D Transferase(Phosphotransferase) domain 1 897 1109 - -
Seca4g08260 1110 SMART serkin_6 820 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08260 1110 Gene3D Ribonuclease Inhibitor 400 498 IPR032675 -
Seca4g08260 1110 SUPERFAMILY Protein kinase-like (PK-like) 803 1096 IPR011009 -
Seca4g08260 1110 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 786 896 - -
Seca4g08260 1110 Gene3D Ribonuclease Inhibitor 49 206 IPR032675 -
Seca4g08260 1110 FunFam Leucine-rich repeat receptor protein kinase EMS1 158 257 - -
Seca4g08260 1110 Gene3D Ribonuclease Inhibitor 499 736 IPR032675 -
Seca4g08260 1110 Gene3D Ribonuclease Inhibitor 294 399 IPR032675 -
Seca4g08260 1110 Pfam Protein kinase domain 824 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08260 1110 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 464 1090 - -
Seca4g08260 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672|GO:0006468
Seca4g08260 1110 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 457 740 - -
Seca4g08260 1110 FunFam Serine/threonine-protein kinase-like protein CCR4 897 1110 - -
Seca4g08260 1110 Pfam Leucine rich repeat 166 226 IPR001611 GO:0005515
Seca4g08260 1110 Pfam Leucine rich repeat 501 561 IPR001611 GO:0005515
Seca4g08260 1110 ProSitePatterns Protein kinases ATP-binding region signature. 826 849 IPR017441 GO:0005524
Seca4g08260 1110 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 258 456 - -
Seca4g08260 1110 SMART LRR_typ_2 669 692 IPR003591 -
Seca4g08260 1110 SMART LRR_typ_2 501 524 IPR003591 -
Seca4g08260 1110 SMART LRR_typ_2 140 165 IPR003591 -
Seca4g08260 1110 SMART LRR_typ_2 309 333 IPR003591 -
Seca4g08260 1110 SMART LRR_typ_2 548 572 IPR003591 -
Seca4g08260 1110 SMART LRR_typ_2 357 381 IPR003591 -
Seca4g08260 1110 SMART LRR_typ_2 213 236 IPR003591 -
Seca4g08260 1110 SMART LRR_typ_2 405 428 IPR003591 -
Seca4g08260 1110 SMART LRR_typ_2 189 212 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08260 Seca-Chr4 196261384 196265284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08260 50 1107 Receptor kinase-like Gene Family AT1G73080 54.429 0.0 1083
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g08260 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08260 - - gmx:100778035 1635.54