Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08255 ATGAGCAATAACAACAATAATAATAGCGTGACAAACATGACGTCGTCGACGTCTCGGGGTTCAACCTCCTCCTCCAATGGCCTCCTCACCGTCACCATCGCAAGCACCCACCCTGACGAGCCCACAACTAACCAAGACGACGACGATTTGCTCGTTGATCCTGACGATCCTTTTGACATTACCCACACCAAAAATGCACCTCCCGAGACCCTCAAGCGTTGGCGACAAGCAGCATTCGTGCTCAATGCCTCCAGGCGTTTTAGATATACCCTTGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGAGCCCACGCACAAGTCATAAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAACGTGAACTAGTGACAAGTGCATCAGTAGCATCACCAACTCCAGTTGGTGACTATGGAGTTGGGCTCGAACAACTTGTTTCAATGTCTAAGAATCAGAATCCTTCTGTTTTACAACAATATGGAGGGGTTAAAGGCTTATCAGATTTACTAAAATCAAATATGGATAAAGGGATTAGTGGAGATGATGTGGATGTATCAAAGAGGAAAAATGCGTTTGGAACTAATACATATCCTCGAAAAAAGGGGAAAAGTTTCTGGAGGTTTCTATGGGAATCTTGGCAAGATCTGACCCTTATAATATTAATTATAGCAGCTGTGGTATCTTTGGTACTTGGAATAAAAACAGAGGGTCTGGAAGAAGGATGGTATGATGGGGGAAGCATCGCTTTCGCAGTTCTTCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTACAGTTTCAAAACTTGAATGCAGAAAAACAAAATATACAATTGGAGGTCATTAGAGGTGGCAGAACAGTAAAAATATCGATATTTGAAATTGTTGTTGGTGATTTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGACGGAGTTTTAATCAGTGGTCACTCACTTTCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCAAAAATCACCTTTTCTAATGTCTGGTTGCAAAGTAGCAGATGGATTTGGTTCTATGCTGATAACCGGTGTTGGTATAAATACCGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGTATAGTTGGGCTTACTGTAGCTGCTGCTGTGCTTGCCGTCCTCTTGGGAAGATACTTTTCTGGCCATACGAAAGATCTAGATGGAAATGTGCAATTTGTTGGTGGAAAGACTAGTATTAGTGATGCAGTAGATGGCGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTAGCAGTTACCTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGACTGTCAGCATGCGAAACAATGGGCTCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGGTGGGTTTTGTGGTTAAAGTATTGGATAGTATGACTGTAGTTGAGGCATATGCTGGGGGGAAGAAACTAAATCCACCAGATGACTTGTCAAAATTGCATCCAGAAGTCCTATCCCTGATAAATGAAGGCATAGCACAAAATACAACTGGCAATGTTTTCATGTCTAAGGATGGTGGTGAGACAGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCTTGGGCCGTGAAGTTGGGGATGAATTTTGATCTTATCAGATCAACTTCAAAAATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGGGGTGGTGTTGCTGTGAAACTGGTGGACTCTGGTGTGCATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAACTTGTACTCAGTATCTTGATTCAAATGGTCAACGGCAATCTATTGAAGAAGAGAAGGCATTCTTCAAGAAAGCTATTGATGACATGGCTGCTCGGAGCTTGCGTTGTGTTGCAATTGCATACAGATCATATGAATTGGACAAAATTCCATCTAATGAGGAGGATTTAGACAAGTGGTCCTTACCAGAACACGAGCTTGTTTTGCTTTCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAAGATGCTGTGGAAGTATGCACTAGAGCTGGCGTTAAGGTACGCATGGTTACGGGAGACAATCTTCAAACAGCAAAAGCAATAGCCTTGGAATGCGGAATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAAGACAGGGAACAAGTTGCTAAGAAAATAACGGTGATGGGAAGGTCTTCTCCAAATGACAAGCTTTTGCTCGTGCAAGCACTGCGTAAAATTGGTGAAGTTGTTGCTGTCACGGGAGATGGCACCAATGATGCTCCTGCGCTTCATGAGGCAGATATTGGTCTTTCTATGGGTATCCAAGGAACTGAAGTTGCAAAAGAGAGCTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTGAAGGTTGTTCGCTGGGGGCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAACTTACTGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAGTATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCTCTTGCACTGGCTACGGAACCACCAACAGACAGTCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGGTCGTACAGGCTGTGTATCAAGTGGCTGTTCTTCTCGTTCTTAACTTTGCTGGTGAAAGTATTCTACATAATAATCAAGATTCCAAAACGCATACCTTACAAGTGAAGAATACTTTAATTTTCAATGCATTCGTCCTGTGCCAAATATTCAATGAATTCAATGCTCGAAAACCAGAGGAAATGAACGTCTTCACGGGAGTAACTAAGAACCGTCTCTTCATGGGAATTGTTGGAATGACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTTACAACGACAGTGAAGCTTGATTGGAAGCAGTGGCTTGCTTCTCTTTGCATTGGGCTTGTCAGCTGGCCTCTTGCAATAGTTGGAAAATTAATTCCTGTTCCCAAAACCCCATTGTCCCGAACATTCTTGAGGGCATTCAGGCGCTTGAAGAAGACTCGTACTGCATAA 3333 0.4227 MSNNNNNNSVTNMTSSTSRGSTSSSNGLLTVTIASTHPDEPTTNQDDDDLLVDPDDPFDITHTKNAPPETLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERELVTSASVASPTPVGDYGVGLEQLVSMSKNQNPSVLQQYGGVKGLSDLLKSNMDKGISGDDVDVSKRKNAFGTNTYPRKKGKSFWRFLWESWQDLTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTVKISIFEIVVGDLVPLKIGDQVPADGVLISGHSLSIDESSMTGESKIVHKDQKSPFLMSGCKVADGFGSMLITGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLAVLLGRYFSGHTKDLDGNVQFVGGKTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQVGFVVKVLDSMTVVEAYAGGKKLNPPDDLSKLHPEVLSLINEGIAQNTTGNVFMSKDGGETEVSGSPTEKAILSWAVKLGMNFDLIRSTSKILHVFPFNSEKKRGGVAVKLVDSGVHIHWKGAAEIVLGTCTQYLDSNGQRQSIEEEKAFFKKAIDDMAARSLRCVAIAYRSYELDKIPSNEEDLDKWSLPEHELVLLSIVGIKDPCRPGVKDAVEVCTRAGVKVRMVTGDNLQTAKAIALECGILASIEDAVEPNIIEGKTFRELSEKDREQVAKKITVMGRSSPNDKLLLVQALRKIGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLVVQAVYQVAVLLVLNFAGESILHNNQDSKTHTLQVKNTLIFNAFVLCQIFNEFNARKPEEMNVFTGVTKNRLFMGIVGMTFILQIIIIEFLGKFTTTVKLDWKQWLASLCIGLVSWPLAIVGKLIPVPKTPLSRTFLRAFRRLKKTRTA. 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08255 1110 PRINTS Sodium/potassium-transporting ATPase signature 636 654 - -
Seca4g08255 1110 PRINTS Sodium/potassium-transporting ATPase signature 250 270 - -
Seca4g08255 1110 PRINTS Sodium/potassium-transporting ATPase signature 500 521 - -
Seca4g08255 1110 Pfam E1-E2 ATPase 284 485 - -
Seca4g08255 1110 NCBIfam HAD-IC family P-type ATPase 446 525 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08255 1110 NCBIfam HAD-IC family P-type ATPase 791 904 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08255 1110 NCBIfam calcium-translocating P-type ATPase, PMCA-type 153 1088 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca4g08255 1110 ProSitePatterns E1-E2 ATPases phosphorylation site. 509 515 IPR018303 -
Seca4g08255 1110 FunFam Calcium-transporting ATPase 841 1090 - -
Seca4g08255 1110 PANTHER CATION TRANSPORTING ATPASE 107 1088 - -
Seca4g08255 1110 SUPERFAMILY Calcium ATPase, transmembrane domain M 164 1088 IPR023298 -
Seca4g08255 1110 FunFam Calcium-transporting ATPase 717 869 - -
Seca4g08255 1110 Gene3D - 68 120 - -
Seca4g08255 1110 FunFam Calcium-transporting ATPase 9 plasma membrane-type 361 541 - -
Seca4g08255 1110 Pfam Ca2+-ATPase N terminal autoinhibitory domain 55 98 IPR024750 GO:0005516
Seca4g08255 1110 SUPERFAMILY Calcium ATPase, transduction domain A 285 380 IPR008250 -
Seca4g08255 1110 SFLD Haloacid Dehalogenase 489 876 - -
Seca4g08255 1110 Gene3D - 188 383 - -
Seca4g08255 1110 CDD P-type_ATPase_Ca_PMCA-like 189 957 - -
Seca4g08255 1110 Gene3D - 215 1077 - -
Seca4g08255 1110 SUPERFAMILY HAD-like 505 929 IPR036412 -
Seca4g08255 1110 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 527 729 IPR023299 GO:0000166
Seca4g08255 1110 MobiDBLite consensus disorder prediction 1 66 - -
Seca4g08255 1110 Gene3D - 504 869 IPR023214 -
Seca4g08255 1110 Pfam Cation transporting ATPase, C-terminus 909 1086 IPR006068 -
Seca4g08255 1110 FunFam Calcium-transporting ATPase 66 122 - -
Seca4g08255 1110 Pfam Cation transport ATPase (P-type) 572 651 - -
Seca4g08255 1110 SFLD p-type atpase 489 876 IPR044492 -
Seca4g08255 1110 SMART Cation_ATPase_N_a_2 163 237 IPR004014 -
Seca4g08255 1110 Gene3D - 517 724 IPR023299 GO:0000166
Seca4g08255 1110 PRINTS P-type cation-transporting ATPase superfamily signature 848 860 - -
Seca4g08255 1110 PRINTS P-type cation-transporting ATPase superfamily signature 507 521 - -
Seca4g08255 1110 PRINTS P-type cation-transporting ATPase superfamily signature 824 843 - -
Seca4g08255 1110 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Seca4g08255 1110 PRINTS P-type cation-transporting ATPase superfamily signature 717 728 - -
Seca4g08255 1110 PRINTS P-type cation-transporting ATPase superfamily signature 739 749 - -
Seca4g08255 1110 Pfam Cation transporter/ATPase, N-terminus 165 232 IPR004014 -
Seca4g08255 1110 FunFam Calcium-transporting ATPase 215 272 - -
Seca4g08255 1110 FunFam Calcium-transporting ATPase 527 724 - -
Seca4g08255 1110 MobiDBLite consensus disorder prediction 1 40 - -
Seca4g08255 1110 FunFam Calcium-transporting ATPase 263 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08255 Seca-Chr4 196132209 196147224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08255 21 1110 Primary Pumps ATPases AT3G21180 76.825 0.0 1687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08255 K01537 - gmx:100817367 1820.82