Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08249 ATGCAATTAGCATCAAACAATGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCAGCATCATCTTAATTTGCAAGCATCTGAAGGAGAGTCTTCGTTTTCGTGTGAAATTATACCTGCTGGGCCTGGGGGGGATTTCACTGCTGCCAACAGTGATGATTTACAAAATGTTCATGTTGATGAGACTTGTCATCTGATAAATGCAGAGCAGCCACAATGCCGGATATGCCTTGATATTGGAGGGGAGGATTTAATTGCCCCATGCCATTGCAAAGGTACACAGAAGTATGTCCACAGATCATGTCTCGATAATTGGAGGTCTACCAAAGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCGTATTGCGTGCAAATGTCCCAGCAGATCGGTGGTGGTTGAGATTAAAATTCCAATTCCTTGTTGCCAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTAGCTTTCTTGGGAGTGCTTGTTTACAAATTCTATGGAGATGAACTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCAATAATATGTGGCCAAAGAATCAATGAACGTCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGGTCTGCAATGTAATAATGATTTCACATCTTTTTGACTTATAA 738 0.4038 MQLASNNDKEECSESEPILNQHHLNLQASEGESSFSCEIIPAGPGGDFTAANSDDLQNVHVDETCHLINAEQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFVLRANVPADRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKVCNVIMISHLFDL. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08249 245 SUPERFAMILY RING/U-box 70 126 - -
Seca4g08249 245 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 195 233 - -
Seca4g08249 245 CDD RING_CH-C4HC3_MARCH 75 123 - -
Seca4g08249 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 127 IPR013083 -
Seca4g08249 245 ProSiteProfiles Zinc finger RING-CH-type profile. 67 129 IPR011016 GO:0008270
Seca4g08249 245 SMART ringv_2 74 123 IPR011016 GO:0008270
Seca4g08249 245 Pfam RING-variant domain 75 122 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08249 Seca-Chr4 195914288 195921038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08249 1 238 C3H Transcription Factor Family AT1G50440 56.904 2.79e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08249 - - gmx:100789593 432.18