Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08242 ATGCCAGCGGTTTACGGAGCTCGCTTGACCACCTTCGAAGACGCCGAGAAGGAGAGTGAATACGGTTATGTTCGTAAGGTGTCAGGACCAGTGGTGGTTGCTGATGGCATGGCTGGAGCTGCTATGTATGAACTAGTACGTGTTGGTCGTGATAACCTCATTGGTGAAATTATTCGTTTGGAAGGGGATTCTGCTACTATTCAAGTTTATGAGGAAACAGCTGGTTTAATGGTTAATGATCCTGTCTTAAGGACACACAAGCCTTTGTCTGTGGAGTTGGGGCCTGGAATATTGGGGAATATTTTTGATGGAATCCAGAGGCCTTTGAAAACTATTGCTAAAAGATCCGGAGATGTCTATATTCCTCGTGGCGTATCTGTTCCGGCACTTGACAAAGATATACTATGGGAGTTTCAGCCTAAAAAAATTGGTGAAGGAGACCTATTGACTGGTGGAGATCTATATGCTACTGTTTTTGAGAATAGTCTAATGCAACACCATATTGCTCTTCCTCCTGATGCCATGGGAAAAATTACTTACATCGCACCACCTGGTCAATATTCCTTGAAGGATACTGTATTGGAGCTTGAGTTTCAAGGTGTCAAAAAAAAGTTCACCATGCTTCAGACTTGGCCAGTACGTACACCAAGGCCAGTTGCATCAAAACTTGCAGCAGATACTCCTCTTCTTACTGGTCAGCGTGTGCTTGATGCTCTTTTCCCCTCAGTTCTTGGAGGGACATGTGCCATACCTGGAGCTTTTGGTTGTGGTAAAACAGTTATTAGTCAGGCTCTTTCTAAGTATTCAAACTCTGATGCTGTTGTTTATGTTGGCTGTGGTGAACGTGGAAATGAAATGGCAGAGGTTCTGATGGATTTCCCACAACTTACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAACGTACAACGCTAGTGGCTAACACTTCAAACATGCCCGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACTTTAGCTGAGTATTTTAGAGACATGGGTTACAATGTCAGCATGATGGCAGATTCAACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCATACCTTGCTGCACGTTTAGCCTCTTTCTATGAACGCGCTGGGAAAGTAAAATGTCTTGGAGGTCCCGAACGTACTGGTAGTGTCACAATTGTTGGTGCTGTTTCTCCACCTGGAGGAGATTTTTCAGATCCTGTGACTTCTGCAACCCTCAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTCGCTCAGAGGAAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTATTCAAAGTACTCAACGGCATTGGAATCCTTTTATGAGCAATTCGATCCAGATTTTATAAACATTAGGACAAAGGCTCGTGAAGTACTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAGCTTGTAGGTAAGGATGCCTTAGCTGAAGCAGACAAGATCACTTTAGAAACTGCAAAGCTTTTAAGAGAGGATTATCTTGCTCAGAATGCTTTTACACCATATGACAAATTCTGTCCCTTCTACAAGTCTGTTTGGATGATGCGCAATATTATCCATTTCTACAATTTGGCAAATCAGGCCGTAGAGAGAGGAGCTGGTACAGATGGTCAGAAGATAACTTACAGCCTCATCAAACATCGTCTGGGAGATCTCTTCTATCGTTTAGTGTCTCAGAAATTTGAGGATCCAGCAGAAGGTGAAGCTGCTTTGGTTGCCAAATTTAAGCAGCTACATGAGGACCTGACTAATGGTTTCCGCAACCTTGACGATGAAACCCGATAA 1872 0.4359 MPAVYGARLTTFEDAEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDILWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHIALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEADKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGTDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALVAKFKQLHEDLTNGFRNLDDETR. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08242 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 18 89 IPR036121 GO:0046034|GO:1902600
Seca4g08242 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Seca4g08242 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Seca4g08242 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887|GO:0033180|GO:0046961|GO:1902600
Seca4g08242 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Seca4g08242 623 FunFam V-type proton ATPase catalytic subunit A 194 457 - -
Seca4g08242 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Seca4g08242 623 Gene3D - 91 457 IPR027417 -
Seca4g08242 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Seca4g08242 623 Gene3D - 134 205 - -
Seca4g08242 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Seca4g08242 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
Seca4g08242 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Seca4g08242 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Seca4g08242 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 621 IPR022878 GO:0046034|GO:0046961
Seca4g08242 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Seca4g08242 623 CDD V_A-ATPase_A 88 460 - -
Seca4g08242 623 Gene3D - 20 89 IPR023366 -
Seca4g08242 623 Gene3D - 459 612 IPR024034 -
Seca4g08242 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Seca4g08242 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08242 Seca-Chr4 195838027 195844877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08242 1 623 Primary Pumps ATPases(2) AT1G78900 93.419 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08242 K02145 - gmx:100775727 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08242 4 195838027 195844877 Seca4g08242 4 195838027 195844877 ECH