Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08241 ATGAATTTCACAAGTCATACCAACTTGATAACTGTTCTGCTGATACTTTCCTGCTTTGGCCTATGCTTGAGTTCTGCCACTAATATGATCACTTCAGCCCAATTCATCAGGGACACTGACACACTAAGCTCAAACAACAGTGACTTCAAGTTAGGATTTTTCAGCCCTGAAAATTCAACAAATCGCTATGTGGGAATCTGGTATCTCTCTCAATCCAATGTTATATGGGTAGCTAACAGGAACCAGCCACTACCAAAAAACTCTTCTGGGATTGTTAAAATCTCTGAGGATGGCAATCTTGTGGTATTAAATAGCAAGAAGAATAAGGCATTTTGGTCAACAAATGTGGCACATATTGCAACAAATTCAACTGCCAAACTCTTAGATACTGGAAATCTGGTCCTACTAGATGGTGCCACAGGGGAAGTTATATGGGAGAGTTTCCAACATCCTTGTGATATTTATGTGCCAAAGATGAAACTAAGTATCAACAGAATTACAGGTAAAAAAGTATACTTGACATCATGGAAAAGCCCTTCTGATCCATCTATTGGGTACTATTTTGCAACTCTTGAACGCCCCAATGCTCCTGAATTGTTTCTCTCACTTAATGGAACTCTCCCATATTGTCGATCTGGTCCATGGAATGGTCGAATTTTTATTGGGTTTCCACAGATGTCAATTGGGTGGAGTTTGATAAACAATGAAGAAGATGGAACTGTTTATCTTACTTATAATTTCCCAAATCAATCAGAGTTTGGAATCATGGGGTTGAATCCACAGGGCCAACTAACAAGTGCATGGTGGAAAAACAGAAAGGAATTGTGGATGACAGCATTCCAAGGAACTTCTTGTGATTTGTATGGCATGTGTGGGGCATTTGGAAGCTGTAATTGGCAGAACACACCAATATGTAGCTGTTTGAATGGCTATAAGCCTAGAAATCTAGAGGAGTGGAATAGGAGAAATTGGACTGGTGGGTGTGTAAGGAAGGAGGTGCTACAATGTGGGGGAGAAGGAGTGAGGAAAGATGGGTTTTTGAAACTTCAGAATAGGAAAGTGCCAGACTTTGTAGAGAGGTTAGCAGCTTCTTTGGAGAGTGAATGCAGGGATCAGTGCATGGAGAATTGTTCTTGTGTGGCATATGCATATGAGAGTGGTATTGGGTGCATGGTTTGGAGTGGAGATTTGATAGACATACAAAGATTCTCAAGTGGAGGAGGGGTTGATCTTTACATTCGTGTGGCACATTCTGTACTCGAAAAATATTCGGAAAAAAGAAGAGATAAGAGATTAATCATTGCAATTGGAGTGACCATAGGAATGATTACCTTAGCTGGTGGCTCTGCTTATCTCGCATGGAAATGGACCGCTAAATCTAGAGGAAAAATAAATTCACAAAGACAAAGAATGAACAAAGGCCAGACGCTGGATGATCAACTACCGCTTTTCAATTTTGAAGAGCTTGCAACTGCTACAAATAATTTTCACCCAGCTAACGTGCTTGGAAAAGGTGGTTTCGGTCCAGTATATAAGGGACAATTGAAAGACGGACAGGAAATAGCAGTGAAAAGGCTTTCAAAAACATCTGGACAAGGGTTAGAAGAATGCATGAATGAGATCTTAGTGATTTCAAAGCTTCAACATCGCAATCTTGTGAGAGTTCTTGGCTGCTGTATTGAACAGGAAGAAAGGATGTTGATCTATGAATACATGCCTAACAAGAGTTTGGATGCATTATTGTTTGATCCAGTCAAAAAGAAGGATCTAGATTGGCCAAAACGCTTCAATATAATTGAAGGAATCTCTCGAGGTTTGCTTTATCTCCACAGAGATTCAAGGCTAAAAATTATACATCGAGATTTAAAGGTTAGTAACATCTTGTTAGATGGAGAGATGAATCCAAAAATATCTGACTTTGGTATGGCGAGAATCTTTGGAGGCCACGATTTACAAGCCAATACTAGAAGAGTTGTTGGAACATTTGGCTATATGCCTCCAGAATATGCATTCAGAGGGTTGTTTTATGAGAAATCAGATGTCTTTAGCTTCGGAGTCTTGCTGCTAGAGATTATTAGTGGGAAAAAAATCAGTAGCTATTATGACCATGACCTATCATTAAGCCTCTTAGGATTTGCATGGAAATTATGGAATGAAAAGGATATCCAATCCCTGATAGACCAAGAAATATGCAATCCAGATTATATGAAAAACATTTTGAGATGCATACATATTGGACTTCTTTGTGTTCAAGAAGTTGCAAAAGAGAGGCCAACTGTGGCTACAGTAGTTTCAATGCTTAATAGTGAGATTGTCAATCTCCCTCTCCCATCATATCCTGCATTCATAGAAAGGCAAATTGTGTGGACTGGAGAATCATCTCAGCAGAACCATAAAACATACTCCATCAACAATGTTACTATCACAGACATGCAGGGTAGATAG 2445 0.3943 MNFTSHTNLITVLLILSCFGLCLSSATNMITSAQFIRDTDTLSSNNSDFKLGFFSPENSTNRYVGIWYLSQSNVIWVANRNQPLPKNSSGIVKISEDGNLVVLNSKKNKAFWSTNVAHIATNSTAKLLDTGNLVLLDGATGEVIWESFQHPCDIYVPKMKLSINRITGKKVYLTSWKSPSDPSIGYYFATLERPNAPELFLSLNGTLPYCRSGPWNGRIFIGFPQMSIGWSLINNEEDGTVYLTYNFPNQSEFGIMGLNPQGQLTSAWWKNRKELWMTAFQGTSCDLYGMCGAFGSCNWQNTPICSCLNGYKPRNLEEWNRRNWTGGCVRKEVLQCGGEGVRKDGFLKLQNRKVPDFVERLAASLESECRDQCMENCSCVAYAYESGIGCMVWSGDLIDIQRFSSGGGVDLYIRVAHSVLEKYSEKRRDKRLIIAIGVTIGMITLAGGSAYLAWKWTAKSRGKINSQRQRMNKGQTLDDQLPLFNFEELATATNNFHPANVLGKGGFGPVYKGQLKDGQEIAVKRLSKTSGQGLEECMNEILVISKLQHRNLVRVLGCCIEQEERMLIYEYMPNKSLDALLFDPVKKKDLDWPKRFNIIEGISRGLLYLHRDSRLKIIHRDLKVSNILLDGEMNPKISDFGMARIFGGHDLQANTRRVVGTFGYMPPEYAFRGLFYEKSDVFSFGVLLLEIISGKKISSYYDHDLSLSLLGFAWKLWNEKDIQSLIDQEICNPDYMKNILRCIHIGLLCVQEVAKERPTVATVVSMLNSEIVNLPLPSYPAFIERQIVWTGESSQQNHKTYSINNVTITDMQGR. 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08241 814 SMART ntp_6 341 415 IPR003609 -
Seca4g08241 814 Pfam Protein tyrosine and serine/threonine kinase 500 767 IPR001245 GO:0004672|GO:0006468
Seca4g08241 814 ProSiteProfiles PAN/Apple domain profile. 336 416 IPR003609 -
Seca4g08241 814 Pfam D-mannose binding lectin 74 177 IPR001480 -
Seca4g08241 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Seca4g08241 814 Gene3D - 22 149 IPR036426 -
Seca4g08241 814 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Seca4g08241 814 SUPERFAMILY Protein kinase-like (PK-like) 479 801 IPR011009 -
Seca4g08241 814 Gene3D Transferase(Phosphotransferase) domain 1 572 773 - -
Seca4g08241 814 SMART blect_4 33 151 IPR001480 -
Seca4g08241 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Seca4g08241 814 CDD B_lectin 41 151 IPR001480 -
Seca4g08241 814 Pfam PAN-like domain 341 400 IPR003609 -
Seca4g08241 814 SMART serkin_6 496 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08241 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 572 777 - -
Seca4g08241 814 Gene3D Phosphorylase Kinase; domain 1 457 571 - -
Seca4g08241 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 148 - -
Seca4g08241 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 217 IPR036426 -
Seca4g08241 814 Pfam S-locus glycoprotein domain 211 314 IPR000858 GO:0048544
Seca4g08241 814 ProSiteProfiles Protein kinase domain profile. 496 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08241 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 571 - -
Seca4g08241 814 CDD PAN_AP_plant 334 416 - -
Seca4g08241 814 CDD STKc_IRAK 502 768 - -
Seca4g08241 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08241 Seca-Chr4 195830216 195834466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08241 484 814 Receptor kinase-like Gene Family AT4G11530 55.621 9.13e-120 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08241 PK_Tyr_Ser-Thr 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08241 - - gmx:100800296 1206.43