Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08236 ATGCTGCTTCAAATTCACATAAATTCCTTTCTCCCACCTTCGTTTCCACCCAAGATTGAGCCCTGTTTTTCATTCAGCAAGTGCGTCACATTCACAAATCCTCCCGAGTCTGAATTCGGTGTTCATTATTATTATCATGATAAACCAAATTCAAGAACAAGTTCAAATCCGCGTTGTCGTTCAGGGATGAGGGAGCCACTTTCATCACTCTCTGAATGGGAACTACAAGAAGGTCGTATTGCCGTTTCAACTTTTCTTCAACAATTTGGAGTCTCAGAGGAGGAATCGCTATCCATCGCATCGAAATCACCTTCTTATCTGAACATGTTGGTGGAAGGTGTCAAGGATTTGGAGCAGCTTTCGATGTGGGATTCCAATTCTGGTGACTTCAACTTCCGTGACAAGCTTCTTCACATTGCTGCTCAAAAAGGTGACAATGGCAAACTCGCTTACTTAGAGAGTCTCGGTTTCACTCTCTATTCCTCTATGAATATTGCAAGGTATCTATCCACTGACACACTACCATCTCTCATACACAAGGTTACATCTATCAAGCAACTCTTGTTTCCTTCAACTCCTTCTGATTCTCATGAATTGCTTATCAAAAGTATTCGCCGCATGATGCGCTACTTATCGATTTCAATTGATGAAGATCTACAACACACTCTTTCGTTTTTCGAAAAGGTTGAAGCAAGACGCGGAGGTCTGAACATTTTGGTTTCTAACGATGATGCAGCTTTCTGTTACTTGATTGAATCGTTTCCTCGTCTGCTTTTGTTATCTGTAGACAATCACGTGACGCGTGTTGTGAATTTTTTTGAGAATATTGGAATCCCTAGAAATCGCATCCCAAATATAATATTGGGTTTTCCTCCTATTCTTTTGTGGAATCTTCAAGTCCTTAAAACTAGAGTACTGGCATTGAAGGAGATTGAAATAGTGGATAAAGATTATGCCAGGTTGATGCTAACATATCCTTGGGTTCTATCTACAAGCATTCAAGAGAACTATGAGGAGGTCCTTGAGTTTTTATATTCTGAGAAGGTTCCAATGACATGGATAGACCATGCAATCAAAAGCCAACCTCATCTACTGGGTTGTTCACCTAGCACGCTTAAGTTGATGCTGGATCAGTTTGCTGAACTAGGGGTTCAAGGCAAAAAGTTGGATCAGGTTATTGCTAAAAGTCCTCAGCTACTATTACGGAAGCCCAGAGACTTTTTACAGAATACCCATCAAGAAGGTGACCTACTCAATTACATTCCACATCCATCTAACATGTTATCCATGCTGCCAAGCACCAATTCAGGATCCAAGAGCATGCCTTGTGCACTCAGCTTCCTGGCTCTATCTCATCCAAAACCTATTTGTTGTCCATTAAAGCATTATTTCCTTTCTTTTCCTCTATCAGTATAA 1416 0.4068 MLLQIHINSFLPPSFPPKIEPCFSFSKCVTFTNPPESEFGVHYYYHDKPNSRTSSNPRCRSGMREPLSSLSEWELQEGRIAVSTFLQQFGVSEEESLSIASKSPSYLNMLVEGVKDLEQLSMWDSNSGDFNFRDKLLHIAAQKGDNGKLAYLESLGFTLYSSMNIARYLSTDTLPSLIHKVTSIKQLLFPSTPSDSHELLIKSIRRMMRYLSISIDEDLQHTLSFFEKVEARRGGLNILVSNDDAAFCYLIESFPRLLLLSVDNHVTRVVNFFENIGIPRNRIPNIILGFPPILLWNLQVLKTRVLALKEIEIVDKDYARLMLTYPWVLSTSIQENYEEVLEFLYSEKVPMTWIDHAIKSQPHLLGCSPSTLKLMLDQFAELGVQGKKLDQVIAKSPQLLLRKPRDFLQNTHQEGDLLNYIPHPSNMLSMLPSTNSGSKSMPCALSFLALSHPKPICCPLKHYFLSFPLSV. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08236 471 PANTHER CGI-12 PROTEIN-RELATED 200 387 IPR003690 GO:0003690|GO:0006355
Seca4g08236 471 SMART mt_12 319 350 IPR003690 GO:0003690|GO:0006355
Seca4g08236 471 SMART mt_12 248 279 IPR003690 GO:0003690|GO:0006355
Seca4g08236 471 SMART mt_12 284 314 IPR003690 GO:0003690|GO:0006355
Seca4g08236 471 SMART mt_12 201 232 IPR003690 GO:0003690|GO:0006355
Seca4g08236 471 SMART mt_12 355 385 IPR003690 GO:0003690|GO:0006355
Seca4g08236 471 Gene3D Transcription termination factor 3, mitochondrial 237 413 IPR038538 -
Seca4g08236 471 Pfam mTERF 270 402 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08236 Seca-Chr4 195733001 195736786 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca4g08236 mTERF 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08236 K15032 - gmx:100802127 457.218