Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08234 ATGTGGCTTCCAAGTCCTAAGGCTACAGGAATTAGAAAAGGAGGAGGAGGAAATGGATTGGTGGCAGTGGCTGTAGGTAAGGATAAAGGAAGCCAATACGCTCTTAAATGGGCCGCTGATAGTCTTCTTTCCAGAGGCCAAACTGTTATTCTAATCCACGTTTTGCACGGCACATCCTCTCATGCTACCGGAGGTAGGGAGGCCATTGTATGTAACATCAACAATTCAAGTGCATCTCCACAGAGACACCAACTTGATACCGCTACCAAGGATCTGTTTCTTACCTTCCATTGCTATTGTACTCGCAAAGATATACGTTGCCTTGATGTCCTACTTGAAGACATTGATGTAGTGAAAGCAATAACAGAATATGTCTCTTATGCTGCAATTGAGAACTTGGTGGTTGGTTCAACATCAAGGCATGGATTTATTAGGTTTAAGTCATCATCAAGTACACCAAGCAGCATATCAAAGGGGGCACCAGATTTCTGTACAGTTTATGTCATTTCTAAAGGGAAAATATCCTCAGTTCGGAATGCCTCTCGTCCAGCCCCACATACCTCCCCACTTATGAGCCATATAAATAATGAAAATAATCAGGATGGAAATCAATCTGAGACAAACTCTAGACGTATGAGTACAATGAGAGACAGGCCATCAATGAAACCTAGCAGCTGGCAGGATGAAAGTATGAAGTCTCCATTTGGAAGAGCAAGAGGCACGAGTGGAATGATATGCATGGACTTCACAGAATCAGATACAGACATATCATTTGTAAGTGAGAGGCCAAGCAGTGGATGTTCATCTTCTGTCTATGACTGTCTTGACTCAGGCCGAACTTCACGACTGTCTACCAGTTCAGATCGTAGCTTTGGATCAACCCGGTTGGGACTCAAGCTCCCTGACCCTGGTTCACCAGATCTGTCATTTTCACAAGAAAGCAATAGAACATCATTTTCATATCAATCTCAGAACATGGATGAAGTAGAAACTGATATGAGGAGGCTGAAGCTTGAGTTAAAGCAAACGATGGAAATGTACAGTACAGCATGCAGAGAAGCACTTACAGCACAACAGAAGTTAATGGAGCTGAACCACTGGAGAATGGAGGAAGAAAAAAAATTAGAAGAGGCACAATTGGCCCAGGAAGCTGCGTTAGCAATTGCAGAGAAAGAGAAAGCAAGGAGTAAGGCAGCAAATGAAGCGGCTGAAGCAGCTAAAAAAATTGCAGAGGTGGAATCAGATAGAAGAGCTAATGTTGAAGTTAAAGCTGTAAAAGAAGCAGAGGAAATGAGGAAGCTATTGGATAATCTAGCCCAAACTGATGTAAGATATAGGAAATACACTATTGAGGAGATTGAAGAAGCCACAAACTTTTTTTCTCAATCTCAGAAAATCGGTGAAGGAGGTTATGGCCCTGTTTATAAATGTTACCTTGATCACACTCCAGTTGCTGTTAAGGTTTTACGTCCAGATTCTGCTCAAGGAAAGTCACAGTTTCAGCAAGAGGTTGACATTCTGAGCTGCATGCGCCACCCAAACTTGGTGCTTCTTCTAGGGGCTTGTCCAGAATATGCTGAGATAGCCACTGGCTTACTGTTCCTCCATCAGACCAAGCCTGATCCTTTAGTGCACCGTGATTTGAAACCAGGCAACATTTTGCTAGACCAGAATTATGTAAGCAAGATAAGTGATGTTGGTTTGGCAAGGCTTCTCCCTGCAGTAGCTGAAAATGTGACACAATGCCACATGACATCAGCAGCTGGAACTTTCTGTTACATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGTGTCAAGTCAGATGTTTATTCTCTTGGGATCATATTTCTACAATTATTGACTGGAAAGCCTCCAATGGGATTGGCTCACCATGCTGGAGAGGCTCTAGAGGATGGCACATTTGGGGAATTGCTGGACCCTTCTGTCCCTGATTGGCCTCTTGAAGAATCCTTGTGCCTTGCAAACATAGCAATCAAATGTGCAGAACTCAGGCGAAAAGATAGGCCAGACCTTGGGGAAGTAGTGTTGCCAGAACTCAATAGACTGAGAGAATTTGCAGAAGAAAAGATGAGTCCTATGTTTTTGTTAGGAGCCTCTAGTTGCAGTGCTGCACCTTCCCCCAACCACAGTGAAGCTTCCACGCAACAGGATGTGATGAGTGATCCACTGCTTATAGCTTCTGGAAGCTCTAGAAGTGCATCAACTCCATCAACACCAACAGAAGGAAAATCCTAA 2259 0.4351 MWLPSPKATGIRKGGGGNGLVAVAVGKDKGSQYALKWAADSLLSRGQTVILIHVLHGTSSHATGGREAIVCNINNSSASPQRHQLDTATKDLFLTFHCYCTRKDIRCLDVLLEDIDVVKAITEYVSYAAIENLVVGSTSRHGFIRFKSSSSTPSSISKGAPDFCTVYVISKGKISSVRNASRPAPHTSPLMSHINNENNQDGNQSETNSRRMSTMRDRPSMKPSSWQDESMKSPFGRARGTSGMICMDFTESDTDISFVSERPSSGCSSSVYDCLDSGRTSRLSTSSDRSFGSTRLGLKLPDPGSPDLSFSQESNRTSFSYQSQNMDEVETDMRRLKLELKQTMEMYSTACREALTAQQKLMELNHWRMEEEKKLEEAQLAQEAALAIAEKEKARSKAANEAAEAAKKIAEVESDRRANVEVKAVKEAEEMRKLLDNLAQTDVRYRKYTIEEIEEATNFFSQSQKIGEGGYGPVYKCYLDHTPVAVKVLRPDSAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYAEIATGLLFLHQTKPDPLVHRDLKPGNILLDQNYVSKISDVGLARLLPAVAENVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGKPPMGLAHHAGEALEDGTFGELLDPSVPDWPLEESLCLANIAIKCAELRRKDRPDLGEVVLPELNRLREFAEEKMSPMFLLGASSCSAAPSPNHSEASTQQDVMSDPLLIASGSSRSASTPSTPTEGKS. 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08234 752 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 150 - -
Seca4g08234 752 MobiDBLite consensus disorder prediction 277 293 - -
Seca4g08234 752 Pfam Universal stress protein family 21 150 IPR006016 -
Seca4g08234 752 MobiDBLite consensus disorder prediction 178 239 - -
Seca4g08234 752 MobiDBLite consensus disorder prediction 277 328 - -
Seca4g08234 752 SUPERFAMILY Protein kinase-like (PK-like) 443 683 IPR011009 -
Seca4g08234 752 SMART serkin_6 460 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08234 752 Gene3D Transferase(Phosphotransferase) domain 1 527 701 - -
Seca4g08234 752 MobiDBLite consensus disorder prediction 307 327 - -
Seca4g08234 752 Pfam Protein kinase domain 526 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08234 752 Pfam Protein kinase domain 461 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08234 752 Gene3D Phosphorylase Kinase; domain 1 438 526 - -
Seca4g08234 752 Coils Coil 326 346 - -
Seca4g08234 752 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 432 530 - -
Seca4g08234 752 MobiDBLite consensus disorder prediction 178 210 - -
Seca4g08234 752 Gene3D HUPs 20 170 IPR014729 -
Seca4g08234 752 Coils Coil 381 415 - -
Seca4g08234 752 ProSiteProfiles Protein kinase domain profile. 460 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08234 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Seca4g08234 752 PANTHER OS02G0152300 PROTEIN 21 525 - -
Seca4g08234 752 CDD STK_N 20 172 - -
Seca4g08234 752 MobiDBLite consensus disorder prediction 710 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08234 Seca-Chr4 195693160 195698940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08234 1 721 Receptor kinase-like Gene Family AT1G78940 55.712 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca4g08234 Pkinase 5.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08234 - - gmx:100801601 1025