Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08233 ATGCTAATGGGCGCGCGCTCTGCTTCGCTTGTGCGCGCACCTACAGCATCCAATAATGTCAACTTGTCATTCACCTTGGTTAACATTGTTCTTTTGATATTGGTTTCATCATGTTCAAGCACAAAGGATGCTGTGACGCTATTGAAGTTCAGGGATACAAGCACAACGGATGCTGAGGCGCTATGGAAGTTCAAGGATTCATTGACGAATGTGGTAGCCCTTAGTAGTTGGGATCCAACCATAAACCGAAGGCCACCTTGCTCTGGCAATGTCCCAAATTGGGTGGGTCTGTTTTGTATGAATGATAGGGTTTGGGGATTGCGCCTTGAGAGCATGGGCCTAACCGGAATCATCGATTTGGGATCTCTGGGTTCAATGCCTGCTTTACGGTCACTTAGCCTAATGAACAACACCTTTGTGGGTCCCTTACCTAACGTCAAGTTGCTGCCAAATTTGAGGGCCATCTACTTGTCCTTTAATCATTTTTCAGGTGAGATACCTGATGATGCGTTTGTCGGTTTGGATAAGTTGAGGAAAATTTATTTGGCAAATAACGAGTTCATTGGGAAAATTCCTTCCTCCCTCGCTACCTTGCCTAGCCTCCTTATCCTCAAGCTCGAATCAAACAAGTTTCATGGTCAAATCCCTAATTTTCCACACAAATATTTGACGATTATCAACCTTTCTAACAATGAGTTAAAGGGTCCCATCCCGGCCAATCTAAGCACCTTCGACCCTTCCTCCTTTAGCGGCAACATAGGTCTATGCGGGCCGCCCCTGAAGAATGAGTGCCAAGCTGAAGCCCCAATCCCAGGGGCAAGTGTGTGGGAGAATTCTGGCAAAATGCGCATTATGAAAATTTTACTTATTGTGATTTTGATAGCATTAATAATAGCTATCATAGTTGCAGTATTGGCCACATGGCGCTTGAGGTCCCAAAATGAGCCTAAGCATCAAGTCTCAGCCTTAAAGTTACAGGCGCAAGCCTCTAACAAACATGTTCCTCCCGTTTATGTTAAAACCAAAAGCCTAGCGGAACACTATGAATCTAATTCTAAGCAAGCATCAGAATACGGTCATGGACATTCCAAGAAAGGGGAACAGGGGAAGTTGACATTCCTCAAGAATGACAATCTAAAGTTTGATTTACAAGATTTGCTAAAGGCCTCTGCTGAAATTCTTGGCAGTGCCTCATTTGGGTCTTCCTACAAGGCAGTAATTTCAGATGGCCAAGCTGTGGTTGTTAAGAGGTATAAGCAAATGAACAATGTGCCAAGAGAAGAGTTCTATGAACACATGAGAAGGCTAGGCAACCTCAACCATCCTAATCTTCTACCTCTACTCGCCTATTATTATAGAAAAGAAGAGAAGTTATTGCTCTCTGCCTTTGTTTACAACGGTTGCTTGGCCAGCCATCTTCATGGTAATCATAACTATCAAAAGCCAGGGCTTGATTGGCCAACCCGATTGAAAATCGTTAAAGGAGTAGCTAAGGGTTTGGCTTACCTATATAGTGCACTCCCAAGCTTGATTGTGCCTCATGGACACCTCAAATCTTCCAATGTGCTTTTGGATGAATCTTTTGAGCCTTTACTCACAGATTATGCCCTTAGTCCTTTAATCAATCTTGACCATGCCCAACAAGTCATCATGCCTTACAAATCCCCTGAGTATGCTCAACTTGGCCGCATTACAAAGAAAACTGATGTGTGGAGTTTTGGAATTCTAATATTGGAGATCTTAACAGGAAAATTCCCAGAGAACTATATCTCACACAGGCATAAGAGTGATTCTGACATAGCTAGTTGGGTGAATGTGATGATTACTGAGAAGCGAACCGGTGAGGTGTTTGACGTAGAAATGAGAGGAGTTGGAAATAGTAAAGCTGAATTGATCAAACTTTTAAAGATTGGCTTAAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTGGATATCAAGGAAGCTCTTGAGCAAATTGAAGACTTGAAAGAAGGGGAAAGTGATGGAGAATACTCTTCATCTCTCATCTCCAATGAAAGGGATGCTTATAGAGCTGTGTGA 2061 0.4294 MLMGARSASLVRAPTASNNVNLSFTLVNIVLLILVSSCSSTKDAVTLLKFRDTSTTDAEALWKFKDSLTNVVALSSWDPTINRRPPCSGNVPNWVGLFCMNDRVWGLRLESMGLTGIIDLGSLGSMPALRSLSLMNNTFVGPLPNVKLLPNLRAIYLSFNHFSGEIPDDAFVGLDKLRKIYLANNEFIGKIPSSLATLPSLLILKLESNKFHGQIPNFPHKYLTIINLSNNELKGPIPANLSTFDPSSFSGNIGLCGPPLKNECQAEAPIPGASVWENSGKMRIMKILLIVILIALIIAIIVAVLATWRLRSQNEPKHQVSALKLQAQASNKHVPPVYVKTKSLAEHYESNSKQASEYGHGHSKKGEQGKLTFLKNDNLKFDLQDLLKASAEILGSASFGSSYKAVISDGQAVVVKRYKQMNNVPREEFYEHMRRLGNLNHPNLLPLLAYYYRKEEKLLLSAFVYNGCLASHLHGNHNYQKPGLDWPTRLKIVKGVAKGLAYLYSALPSLIVPHGHLKSSNVLLDESFEPLLTDYALSPLINLDHAQQVIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYISHRHKSDSDIASWVNVMITEKRTGEVFDVEMRGVGNSKAELIKLLKIGLSCCEENVERRLDIKEALEQIEDLKEGESDGEYSSSLISNERDAYRAV. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08233 686 Gene3D Phosphorylase Kinase; domain 1 353 463 - -
Seca4g08233 686 FunFam Pollen receptor-like kinase 1 464 673 - -
Seca4g08233 686 ProSiteProfiles Protein kinase domain profile. 388 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08233 686 Gene3D Ribonuclease Inhibitor 221 261 IPR032675 -
Seca4g08233 686 SUPERFAMILY Protein kinase-like (PK-like) 392 658 IPR011009 -
Seca4g08233 686 Gene3D Ribonuclease Inhibitor 54 220 IPR032675 -
Seca4g08233 686 SUPERFAMILY L domain-like 84 243 - -
Seca4g08233 686 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 32 664 IPR046959 -
Seca4g08233 686 Pfam Leucine rich repeat N-terminal domain 56 99 IPR013210 -
Seca4g08233 686 Pfam Leucine rich repeat 150 211 IPR001611 GO:0005515
Seca4g08233 686 Pfam Protein kinase domain 392 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08233 686 Gene3D Transferase(Phosphotransferase) domain 1 464 672 - -
Seca4g08233 686 FunFam pollen receptor-like kinase 1 357 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08233 Seca-Chr4 195682801 195686204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08233 45 682 Receptor kinase-like Gene Family AT5G35390 48.998 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g08233 Pkinase 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08233 - - gmx:100801053 954.125