LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g08225	ATGCAGGGAACATCTATGGAAGGCCCAATTCCACCAACCATATCTCAGTTGAAGCTTTTGACTGAATTGAGAATAACTGATTTGAATGGACCAACTATGACGTTTCCTGATCTGAAGGATTTGAAAAACTTGGAACGACTGGAATTGAGAAATTGCTTAATCACTGGTCCCATTCAGGATTACATTGGTGAAATGGAAAAATTAGTTACTCTAGACCTAAGCTTCAATAGGTTGACTGGTCCAATCCCAGATTCAATTCAGGGATTGAAAGGGCTAGATTACATGTTTCTGACTAATAATTCTTTGAGCGGACCGATTCAAGACTGGATACTGAAATCCAAAATTAATATAGATTTATCTTACAACAATTTTTCAAAGTCTGCTGCATCTAGCTGCCAGCAATTGGATGTGAACTTGGCTTCAAGCCATTCTTCTTCTGCAGTCACTTCGCCTTCAACTTTTTGTTTGAAGAGGAACCTACCTTGTGCAGGAAAACCCCAGTATCATTCACTGTTCATAAACTGTGGAGGACCTGAAGGGGAGTTTGAGGGCAATAACTTTGTAGGAGATCTCCAGAAAGATGGCATTTCAAACTTTGTTCTTAGAAATGAAGGGCAATGGGCTTATAGCAGCACAGGAGTGTTTCTAGGAAAAGTTGATGCAGATTATACAGCAGAAAATACACTTTCTTTAAATATTAGTGGTCCAGAATACTATCAAACTGCACGTCTTGCTCCTCTGTCACTTAATTACTATGGCCTTTGTATGCTGAATGGCAATTATAAAGTGAAGCTACATTTTGCTGAGATAATGTATACTGATGATCATACTTATAGCAGTCTTGGAAGGCGCATATTTGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTATGGAAGCAGCTGGTGGAGTTGGAAAAGGCATCACTAGGGAATTTGATGTGGATGTTAATGATAGCACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACAGCCATTCCTGATAGAGGTGTATATGGACCTCTTATATCTGCTATCTCGATAACACCAAACTTTGAAATTCCTTCAGATAAAGGGTTGTCTGCTGGAGCTATTGCTGGAATTGTGGTTGCCTCGTGTGTGTTTGTCATACTGATAGTGGTTGTCCTTTGGAAGATGGGTTTCCTTGGTGGGAAAGATACAACAGACAAAGAACTTCTAGATCTGAAAACTGGTTATTTCAGCTTAAGACAAATTAAAGCAGCCACTAATAATTTTGACCCCTCAAATAAGATAGGTGAAGGAGGATTTGGGCCAGTATACAAGGGTGTGCTGCCAGATGGTGATGTGATTGCTGTTAAACAACTCTCCTCCAAATCAAAGCAAGGGAACCGTGAATTTGTTAATGAAATTGGAATGATATCTGCTTTGCAACATCCAAATCTTGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTGCTGATATATGAGTACATGGAGAACAACAGTCTTGCCCGTGCACTTTTTGGTAAACAAGAGCAGAAGCTGCACTTAGACTGGCCCACAAGAATGAAGATCTGTTTGGGGATAGCAAGGGGATTAGCATATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAAGGATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACACATATCAGTACTAGGATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTTGGAATTGTAGCTTTGGAGATTGTTAGTGGAAAAAGCAACACAAATTATAGGCCAAAGGAGGAGTTTGTATATCTTCTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGATTTGGTGGATCCAAGTCTTGGTTCAAGGTACTCACCAGAGGAGGCCATGGGAATGCTGAGCTTGGCACTCTTATGCACCAATCCATCTCCCACTCTTAGACCATCCATGTCATCTGTAGTGAGCATGCTTGAAGGGAAAACTCCAATCCAAGCACCAATAATCATGCGCAGTGAGAGTAGCCAAGATGCAAGATTTAAAGCCTTTGAGTTTCTATCACATGACAGCCAAACTCTTGTTTCTTCTGCATTCTCACAGGAAAGTGTAGAGCAAAGACCGAGATTAGCAGATGGGCCATGGGTTGACTCCTCCATATCTCTTCAGAGTGAAGATGAGCATTCTTCAACCAGTAAACTTCTTTGA	2319	0.4053	MQGTSMEGPIPPTISQLKLLTELRITDLNGPTMTFPDLKDLKNLERLELRNCLITGPIQDYIGEMEKLVTLDLSFNRLTGPIPDSIQGLKGLDYMFLTNNSLSGPIQDWILKSKINIDLSYNNFSKSAASSCQQLDVNLASSHSSSAVTSPSTFCLKRNLPCAGKPQYHSLFINCGGPEGEFEGNNFVGDLQKDGISNFVLRNEGQWAYSSTGVFLGKVDADYTAENTLSLNISGPEYYQTARLAPLSLNYYGLCMLNGNYKVKLHFAEIMYTDDHTYSSLGRRIFDVSIQGFKYLKDFNIMEAAGGVGKGITREFDVDVNDSTLEIHLYWAGKGTTAIPDRGVYGPLISAISITPNFEIPSDKGLSAGAIAGIVVASCVFVILIVVVLWKMGFLGGKDTTDKELLDLKTGYFSLRQIKAATNNFDPSNKIGEGGFGPVYKGVLPDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGKQEQKLHLDWPTRMKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLGSRYSPEEAMGMLSLALLCTNPSPTLRPSMSSVVSMLEGKTPIQAPIIMRSESSQDARFKAFEFLSHDSQTLVSSAFSQESVEQRPRLADGPWVDSSISLQSEDEHSSTSKLL.	773

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g08225	772	Gene3D	Ribonuclease Inhibitor	1	153	IPR032675	-
	Seca4g08225	772	Gene3D	Phosphorylase Kinase; domain 1	395	500	-	-
	Seca4g08225	772	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	1	726	-	-
	Seca4g08225	772	MobiDBLite	consensus disorder prediction	736	772	-	-
	Seca4g08225	772	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	547	559	IPR008271	GO:0004672\|GO:0006468
	Seca4g08225	772	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	501	708	-	-
	Seca4g08225	772	Gene3D	Transferase(Phosphotransferase) domain 1	501	713	-	-
	Seca4g08225	772	Gene3D	-	169	357	-	-
	Seca4g08225	772	ProSiteProfiles	Protein kinase domain profile.	425	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g08225	772	SMART	serkin_6	425	696	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g08225	772	Pfam	Leucine rich repeat	43	102	IPR001611	GO:0005515
	Seca4g08225	772	Pfam	Protein tyrosine and serine/threonine kinase	429	693	IPR001245	GO:0004672\|GO:0006468
	Seca4g08225	772	Pfam	Malectin domain	171	352	IPR021720	-
	Seca4g08225	772	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	168	357	-	-
	Seca4g08225	772	CDD	STKc_IRAK	431	698	-	-
	Seca4g08225	772	SUPERFAMILY	L domain-like	3	141	-	-
	Seca4g08225	772	SUPERFAMILY	Protein kinase-like (PK-like)	409	697	IPR011009	-
	Seca4g08225	772	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	397	500	-	-
	Seca4g08225	772	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	30	153	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g08225	Seca-Chr4	195340739	195355568	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g08225	1	763	Receptor kinase-like Gene Family	AT1G53440	66.150	0.0	1014

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca4g08225		PK_Tyr_Ser-Thr	2.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g08225	-		-	gmx:100817368	1303.89