Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08224 ATGATGAGGCTTGGTTTGTTCATGCTATGCTTATCTTCTTTGTTATTTGTTGTTAATGCATTGAACACTGATGGGGTGACTCTGCTCTCACTCTTGAGGCATTGGACATTTGTACCTCCTTCTATGAACTTGAGTTGGAAGAATGCTTCTGATTCTACTCCATGCTCTTGGTTGGGTATCCAGTGTGACCCTGCCTTCAATGTGGTCACTGTTAATCTCACTGGATACTCAGTTTCTGGTCTATTAGGAAATGAAATAGCACACTTGAGTCACTTGAAAACCATTGACTTGAGCTCTAACAACCTCTCTGGAAACATACCTCCAGTGTTAGGGAATTGTAGTCTTCTTGAGTATTTGGACCTTTCTGGTAATAGTTTTAGTGGAAAAATACCATACAGTTTGAGCAACTTGCAGAATTTAAGGTTTTTCAATGTTGACAATAATATGCTAAATGGTGAAATTCCTGAATCCTTGTTTCAAATACCACACTTGGAACATCTGATGCTGAGCAATAACTATCTGACTGGTCCCATTCCCATGAATATTGGGAATGGGACAAATCTATTGAGGCTGTATCTAGATGTCAATCAGTTGTCAGGGGTGATTCCCTTTTCCATTGGAAACTGCAGCAAATTAATGGAATTGTTTTTGGATGAAAACCAGTTACATGGAGTTCTACCTGGAAGTTTCACCAGTCTCACAAACCTTGCTCAGTTAGGTGTCAGTGATAATAGTCTTGGGGGTACAATTCCATTGATTTCTGGTAGATGCAAAAGTTTGCAGTATTTAGATGTGTCACATAACAAGTTTAGTGGAGGCATACCATCAAGCTTGGGAAATTGTAGTAGATTAACAGAATTTTATGCTGTCAAGGCAAATTTAGTAGGCAACATCCCATCATCCTTAGGCCTACTAAGTGGACTTTCTATTCTTCGCCTTGAAGGGAATCAATTGTCTGGTCAAATACCTTCAGAAATTGGTAACTGCAAGTCTTTGAAGGAGTTAACTTTAAGTAAAAATCAACTTGAGGGAGAAATTCCTAGTGAATTGGGAATGTTAAGTGAATTACAAGACCTTAGATTGTTTTCCAACCATTTGACAGGTGAAATTCCAATTAGCATTTGGAAGATTCCTAGTCTTGTGTATGTGAATCTCTATTACAACAATCTTTCTGGGGAACTACCATTAGAATTGACAGAACTCAAAAACCTGAAAAATATCTCATTGTTTAACAACCGATTCTCTGGAGTCATTCCTCAAAACTTAGGAATCAATAGCAGTTTAGTGTTGTTGGACTTGACAGAAAAAAACTTCACAGGTAACATCCCTCCAAATCTTTGCTTTGGAAAGGAATTAGAAGTGTTAGCCCTTGGTTCAAATCAACTGCAAGGTGGCATACCTGATGATATAGGAAGGTGTACATCTCTTACTAGGTTGCTTCTCAATGAAAATAACCTAACTGGTGCTCTACCTGACTTTGAAAGCAATAGCAGTCTCAACTACATGGACATCAGTGAGAATAACATCATTGGAGAAATCCCATCAAGTTTTGGAAACTGCACAAATCTTACTGATGTTAATTTGTCCCACAATAATTTTATGGGGCACATACCCTTAGAGCTAGGAAGTCTTGAGAATCTTCAGAGGCTAAATCTTTCTCACAACAAGTTGGATGGTCCTTTGCCAACTGAGCTGTCAAATTGCATCAAAATGCAATATTTTGATGTGGGATTCAATTCTCTAAATGGTTCATTCCCATCAAGTTTGACAAGCTGGACAAGGCTTACCACATTGACATTAACAGAGAATCATTTCACTGGTGGTATCCCAACTTTCTTATCAGAATTTAAACACCTTTCTGATCTACAGCTTGGGGGAAATCACTTTGGAGGCCAAATTCCTAGATCAATTGGTGAGATGCAGAATCTACTGTATGCTTTGAATATAAGTTCCAATGAATTGACAGGTGAAATTCCTTCTGAGATTGGGAATCTGCAATTGCTGCAAAGACTGGATATATCTCTCAACAATTTGACTGGAAACATTGAAGTTCTTGATGACCTACCTTCATTGGTTGCAATCAATATTTCATACAATTCCTTTTATGGTTCTCTTCCTGATACACTAGTGAACTTGCTCTCTTATTCTCCATCATCATTCTTGGGCAATCCTGACTTATGTGTCAGGTGTATGCCATCAAATGGCTTGAATTGTTCCAAAAGTAACAGTTTAAAGCCATGTGACAACAAATTCCCTCATGCAAAAGGGATGAGTAAAATTAAAGTTGGGATGATAGCACTTGGATCCACACTGCTTATAATATTTCTGTTGTTTGGTCTTGTTTATGTGCTATACTTTAAGGAGGATGTCAAGATTTTTCCTGAGCAGAAATCATCTTCTTTCCTCAAGAAAGTGATGCAGGCTACAGAGAACCTAAATGACATGCATATTATTGGCAGAGGAGCACATGGAGTTGTTTATAAAGTTGAATTCAGTCCAGACAAAATTTTTGCCATAAAGAAAATAGTCTTTGCAGACATCAAAGGGCAGATCACAAGCATGAGCAGGGAGATTGAAACCATGGGGAAGATCAGGCACCGAAATTTAGTAAAAATTGAAAATTTCTGGTTGAGAAAGGACTATGGTCTAATTCTATTCAAGTATATGCAGAATGGAAGTCTTTATGATGTTCTGCATGAAAAGTATCCACCCCCATATTTAGATTGGAGCATCCGCTATAAGATTGCTGTTGGAATTGCACATGGACTGGAATATCTTCATCATGATTGCATTCCTGTTATAGTGCACAGAGACGTCAAACCAAAGAATATACTTTTAGATTCTGATATGGAGCCTCATATTGCTGATTTTGGCATTGCCACACTTTTAGATCACTCCTATACTTCAGTGCAATCTTTCTCAGTTCCTGGTACAGTTGGGTATATTGCTCCTGAGAATGCTTACTCCACAGTGATGAGCAGGAAGTCTGATGTGTATAGTTATGGAGTGGTTTTGTTTGAGCTAATAACCAGAAAGAAGGTGCTAGATGATCCTTCATTTGTGGAGGAAATAGATATTGTGGGGTGGGTTAAATCTGTGTGGGAAGAAACAAGAGACATTGATAGTATTGTTGATTCGAACCTTGTAAAGGAGTTTATGGACTCAAATGTGAGGGAACAAGCTGAACAAGTGCTTTTGGTGGCATTGAGATGTACTGAGAAGCATCCACATGAGAGACCAACAATGAGAGAAGTTGTTAAGCAATTGACTAACAGATTTAAAGCCCCAGACATGAAGAAGTAG 3303 0.383 MMRLGLFMLCLSSLLFVVNALNTDGVTLLSLLRHWTFVPPSMNLSWKNASDSTPCSWLGIQCDPAFNVVTVNLTGYSVSGLLGNEIAHLSHLKTIDLSSNNLSGNIPPVLGNCSLLEYLDLSGNSFSGKIPYSLSNLQNLRFFNVDNNMLNGEIPESLFQIPHLEHLMLSNNYLTGPIPMNIGNGTNLLRLYLDVNQLSGVIPFSIGNCSKLMELFLDENQLHGVLPGSFTSLTNLAQLGVSDNSLGGTIPLISGRCKSLQYLDVSHNKFSGGIPSSLGNCSRLTEFYAVKANLVGNIPSSLGLLSGLSILRLEGNQLSGQIPSEIGNCKSLKELTLSKNQLEGEIPSELGMLSELQDLRLFSNHLTGEIPISIWKIPSLVYVNLYYNNLSGELPLELTELKNLKNISLFNNRFSGVIPQNLGINSSLVLLDLTEKNFTGNIPPNLCFGKELEVLALGSNQLQGGIPDDIGRCTSLTRLLLNENNLTGALPDFESNSSLNYMDISENNIIGEIPSSFGNCTNLTDVNLSHNNFMGHIPLELGSLENLQRLNLSHNKLDGPLPTELSNCIKMQYFDVGFNSLNGSFPSSLTSWTRLTTLTLTENHFTGGIPTFLSEFKHLSDLQLGGNHFGGQIPRSIGEMQNLLYALNISSNELTGEIPSEIGNLQLLQRLDISLNNLTGNIEVLDDLPSLVAINISYNSFYGSLPDTLVNLLSYSPSSFLGNPDLCVRCMPSNGLNCSKSNSLKPCDNKFPHAKGMSKIKVGMIALGSTLLIIFLLFGLVYVLYFKEDVKIFPEQKSSSFLKKVMQATENLNDMHIIGRGAHGVVYKVEFSPDKIFAIKKIVFADIKGQITSMSREIETMGKIRHRNLVKIENFWLRKDYGLILFKYMQNGSLYDVLHEKYPPPYLDWSIRYKIAVGIAHGLEYLHHDCIPVIVHRDVKPKNILLDSDMEPHIADFGIATLLDHSYTSVQSFSVPGTVGYIAPENAYSTVMSRKSDVYSYGVVLFELITRKKVLDDPSFVEEIDIVGWVKSVWEETRDIDSIVDSNLVKEFMDSNVREQAEQVLLVALRCTEKHPHERPTMREVVKQLTNRFKAPDMKK. 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08224 1100 PRINTS Leucine-rich repeat signature 544 557 - -
Seca4g08224 1100 PRINTS Leucine-rich repeat signature 92 105 - -
Seca4g08224 1100 SUPERFAMILY Protein kinase-like (PK-like) 798 1089 IPR011009 -
Seca4g08224 1100 SUPERFAMILY L domain-like 295 534 - -
Seca4g08224 1100 Pfam Leucine rich repeat 90 150 IPR001611 GO:0005515
Seca4g08224 1100 Pfam Leucine rich repeat 498 557 IPR001611 GO:0005515
Seca4g08224 1100 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Seca4g08224 1100 FunFam Predicted protein 297 396 - -
Seca4g08224 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Seca4g08224 1100 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 180 274 - -
Seca4g08224 1100 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 20 179 - -
Seca4g08224 1100 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 785 888 - -
Seca4g08224 1100 SMART LRR_typ_2 89 113 IPR003591 -
Seca4g08224 1100 SMART LRR_typ_2 544 568 IPR003591 -
Seca4g08224 1100 SMART LRR_typ_2 353 377 IPR003591 -
Seca4g08224 1100 SMART LRR_typ_2 209 232 IPR003591 -
Seca4g08224 1100 SMART LRR_typ_2 305 329 IPR003591 -
Seca4g08224 1100 SMART LRR_typ_2 137 161 IPR003591 -
Seca4g08224 1100 SUPERFAMILY L domain-like 26 316 - -
Seca4g08224 1100 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
Seca4g08224 1100 FunFam Serine/threonine-protein kinase-like protein CCR4 889 1100 - -
Seca4g08224 1100 SUPERFAMILY L domain-like 426 741 - -
Seca4g08224 1100 ProSiteProfiles Protein kinase domain profile. 812 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08224 1100 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Seca4g08224 1100 Gene3D Ribonuclease Inhibitor 255 493 IPR032675 -
Seca4g08224 1100 Gene3D Transferase(Phosphotransferase) domain 1 889 1098 - -
Seca4g08224 1100 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 409 738 - -
Seca4g08224 1100 Pfam Protein kinase domain 814 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08224 1100 Gene3D Ribonuclease Inhibitor 494 747 IPR032675 -
Seca4g08224 1100 Pfam Leucine Rich Repeat 259 281 IPR001611 GO:0005515
Seca4g08224 1100 SMART serkin_6 812 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08224 1100 PANTHER LEUCINE RICH REPEAT KINASE 2 349 1091 - -
Seca4g08224 1100 ProSitePatterns Protein kinases ATP-binding region signature. 818 841 IPR017441 GO:0005524
Seca4g08224 1100 Gene3D Ribonuclease Inhibitor 184 254 IPR032675 -
Seca4g08224 1100 Gene3D Phosphorylase Kinase; domain 1 785 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08224 Seca-Chr4 195308076 195311739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08224 12 1091 Receptor kinase-like Gene Family AT1G73080 51.963 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g08224 Pkinase 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08224 - - qsu:112010432 1339.32