Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08187 ATGACTTGTTGCTCTCATCTTTTCAGAAAAAAAGGGCCTCCCTCAACCACACGATTCAATGGAGTTGATATAGATATTTCAGAAATTCAGAATGTCAACATTTACGCTTACAAGGAGTTGCAAATTGCCACAGAAAATTTTAGTCCCGCAAGAAAGATAGGGCAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTGAAAGATGGTTCTCTAGTAGCTATAAAAGTTCTATCAGCTGAATCAAGGCAAGGGGTCCGGGAATTCTTGACAGAAATCAAGGTGATCACTAGTATAGAACATGAGAATCTAGTTAAGTTGTATGGATGCTGTGTGGATGACAACCACAGGATTCTGGTATATGGCTATCTTGAGAATAATAGCCTAGCACAAACACTTCTCGGTTCAAGCCATAGTAGCATCCAATTCAGTTGGCATGTAAGGCGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACATATTATTCATAGAGACATAAAAGCCAGCAATGTACTACTTGACAAAGACCTCCAACCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCTCCAAACTTGACCCATATTAGTACAAGGGTTGCTGGAACAGTTGGTTATCTGGCACCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCAGACATCTATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTTACAAGGGCATGGAATTTGTATGAGAGAGGGGAGCTAGAAATATTGGTGGATGCTTTTCTAGATGGAGACTTCAATATTGAGGAAGCAGTCAGGTTTTGTAAGATTGGTCTTCTTTGCACACAGGATTCTCCTCAGCTCCGCCCTTCTATGTCCACTGTGCTTGACATGCTTGTAGGTGAAAAAGATGTGAATGAGGAGAATATTGTAAAACCAGGCGTGATATTTGAATTTGTGGAAGCCACAGTGGAAGGGAAACAAAAAAGCAAGTCTGAAGTGGAAAGTACATCTTTGTTGGCTGGTTCAAGGAAGCAAGATGATTCATCTTCATCAGGAACTGTGACCTCTTTTGCTACCATGACCTTCACTGCAATTTATGACAGAAGCAATTAA 1173 0.4101 MTCCSHLFRKKGPPSTTRFNGVDIDISEIQNVNIYAYKELQIATENFSPARKIGQGGFGSVYKGKLKDGSLVAIKVLSAESRQGVREFLTEIKVITSIEHENLVKLYGCCVDDNHRILVYGYLENNSLAQTLLGSSHSSIQFSWHVRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRAWNLYERGELEILVDAFLDGDFNIEEAVRFCKIGLLCTQDSPQLRPSMSTVLDMLVGEKDVNEENIVKPGVIFEFVEATVEGKQKSKSEVESTSLLAGSRKQDDSSSSGTVTSFATMTFTAIYDRSN. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08187 390 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08187 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Seca4g08187 390 PIRSF ILK 334 379 - -
Seca4g08187 390 PIRSF ILK 5 273 - -
Seca4g08187 390 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Seca4g08187 390 MobiDBLite consensus disorder prediction 354 373 - -
Seca4g08187 390 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08187 390 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08187 390 SUPERFAMILY Protein kinase-like (PK-like) 30 326 IPR011009 -
Seca4g08187 390 CDD STKc_IRAK 53 318 - -
Seca4g08187 390 FunFam cold-responsive protein kinase 1 123 334 - -
Seca4g08187 390 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Seca4g08187 390 FunFam cold-responsive protein kinase 1 18 122 - -
Seca4g08187 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Seca4g08187 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08187 Seca-Chr4 194130525 194134521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08187 23 326 Receptor kinase-like Gene Family AT1G07650 54.693 5.85e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08187 Pkinase 9.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08187 - - gmx:100801735 667.537