Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08155 ATGGTTCAATGTTATGCTCTGCAAGTAATCCATTTTATTGATTTCAAATACAATGGCGAGAGAAATTTTGATATTCAAATTAAAAATTCTGAGTTGGTAGAGATTGAGTATCTTGTTTTGCTGAATCAACCCCCTGCCATGATTCCTCCACCCCCTGAATTTGAAACGAATGAACAACCCCCTCAAGATGAGAATATGCATTCTGCTGATATTGTTGGATGGGATGTTCAAGTTACAGAACCTTTTACTTCTGGAAAGTATCCATTGTATATCCCTGCTCATGTGGCCAATATAATGATTGGATGTAGTCAACGTCATTTGGACCTTATTAGTGATGGTGGTGTACGTGTTCAGGCAAAAATTTTGAACATAAAAATCAAAACCAGAAATGTGCGATATCTTGGATTGGGATGGTATCAGTTCTGCAAGGATCTTCATGTGCATGTTAAAGATATTGTTCAATTTCGCTTTTATGGCAATCCTTATGAGCTTAGGGGTATAAATTTTGTTTCTCTGTCTGATGGGGAAAGTGATGAGGATTGTGAAGGAGTACCATGGAATGAAGATTTTGATGACGAAGAGAGTGAGGAAAATGAATATGAACATGACACAGTTGATAAATATAGTATTGATTCTTTGATGGATGTAGGGAAAATTGACATGAAGACTGTAAGTGAAGATGAGGTGAAGATGTATCATTTCAGTTCTCGAAAGGTTGCTTTTCATTTCTATAATAAGTATACTCAGAAAAGAGGATTTGTCGCGCGAAGGTCGAACACAGTTGTAAACAAGGAAGGTCGAGTGTCACAACAAACATTTGTGTGTTTCAAACAGGGATTTAGATTGAAAAAACATTTGAATAAGGTGAATCGTAAGAGGGAGGCAAGACCTATTACTAGGTGTGGTTGTTTTGCTTTCATGCGAGTGCGATATGAACGAGAGAGTAGTAGGTGGATGGTTAAAGCTTTTAGTGATGAGCACAGCCATGACATGCTTCCTGGAAAATACGATGGAATGTTGAGTTCACATAGGAAGATGACTGAAACAGATATAATAGCCATGAACACTATGCGAGATGCTGGAATTGGTGTAACTCACATTTATGGGCTAGTGGCTAATCAGGGTGGAGGATTTAAAAATGTGGGTTACAAGAAACGTGATATGTACAATGAAATTATGAAACAAAGGAGAAGTGTAAGAAATTATGCTAGGGCGGCGTTATCATATCTCCGAGCATTGCATCGGAGTGATAAGGACATGTATTGGTGTCATACTGTGGATGAAGAAGGTAGGTTGAAACATTTATTTTGGAGTGATGGTAGAAGCCAATCAGATTACCTGGTGTTTGGTGATGTACTTGCATTTGATGCAACATATAGACGGAATAAGTACATGTCACCTCTAGTTGTCTTTGCTGGAGTGAGCCATCATAATCAAACTATCGTGTTTGGTAGTGCTTTAGTTGCTAATGAAACAGAAGAGACATATGTGTGGTTGCTTAAAGAGTTTTTACGTGTCGTGAAAGGAAAGGTTCCAATTTCTGTTATAACTGACGGTGATATTGCAATGAGGAATGCTATAAACATGAAGGAGTCGAAAGAGGACTTTGAGTCAATTAGAGGAGTTCTAGTTCTGCAAACACTTTACCGGGAGATAGAATTATTTGCTGCTAAGGTGTATAGTAGGAAGGTTTTTATGAAGTTTAGATCTGTGCTTTGGAGGGCTAATAAGCTTAAGGTATGCGGTTGTGAAAGGACACCAAATTGTTCCATCTACATTGTGACAAACAGATCAAATGGTGCTAGAGAGTGGAATGTGTCCTATGTTGTAGAAAAAGAAGAAATGAAGTGTTCTTGTCAGCAGATGCAGTCAATGGGAATTCCGTGTGAACATATTGTTGTCATTTTACATTACCTGGATAAAAAAGAGTTGCCAAATTCACTTATTTTGAATAGGTGGACAAAATATGCTAAACAGGGTGTTGAAGGTGCTGAGGGTGAAGGAGTTGTTTGTTGTAGTGAAGGTGGTTCTATGTTTAGGACTGGTTTGATGTCACTGTTGTTTGAGTGCTATGAGTTGTGTAAAGTTGTGGGTAAAAGGTTAGACAAATTGGATGAAACAAGAAGAGTTATAAGGAATCAAATGCGAAACTTTAAAGAAACAACCTCGGATGCAAACCGTGAAGAAGGCAATGAAGATGAAAATGATGACATTGATTTGAGGGATCCTAGCAGAGTTAGAACCAAAGGTTGTGGTTCGAGGCACGTTGGCGGAGCAGGTAAAAGCAATCGGAGGACAACAACATGTAGTTTGTGCCAAGTTCGCGGTCATAACAAAAAGACTTGTGGACTTCGTAGAAGTGAAGGAGCTTCCATTACAATTGAAACTGGTGTATGCGGAGATCAAATGAATGAGTAA 2418 0.385 MVQCYALQVIHFIDFKYNGERNFDIQIKNSELVEIEYLVLLNQPPAMIPPPPEFETNEQPPQDENMHSADIVGWDVQVTEPFTSGKYPLYIPAHVANIMIGCSQRHLDLISDGGVRVQAKILNIKIKTRNVRYLGLGWYQFCKDLHVHVKDIVQFRFYGNPYELRGINFVSLSDGESDEDCEGVPWNEDFDDEESEENEYEHDTVDKYSIDSLMDVGKIDMKTVSEDEVKMYHFSSRKVAFHFYNKYTQKRGFVARRSNTVVNKEGRVSQQTFVCFKQGFRLKKHLNKVNRKREARPITRCGCFAFMRVRYERESSRWMVKAFSDEHSHDMLPGKYDGMLSSHRKMTETDIIAMNTMRDAGIGVTHIYGLVANQGGGFKNVGYKKRDMYNEIMKQRRSVRNYARAALSYLRALHRSDKDMYWCHTVDEEGRLKHLFWSDGRSQSDYLVFGDVLAFDATYRRNKYMSPLVVFAGVSHHNQTIVFGSALVANETEETYVWLLKEFLRVVKGKVPISVITDGDIAMRNAINMKESKEDFESIRGVLVLQTLYREIELFAAKVYSRKVFMKFRSVLWRANKLKVCGCERTPNCSIYIVTNRSNGAREWNVSYVVEKEEMKCSCQQMQSMGIPCEHIVVILHYLDKKELPNSLILNRWTKYAKQGVEGAEGEGVVCCSEGGSMFRTGLMSLLFECYELCKVVGKRLDKLDETRRVIRNQMRNFKETTSDANREEGNEDENDDIDLRDPSRVRTKGCGSRHVGGAGKSNRRTTTCSLCQVRGHNKKTCGLRRSEGASITIETGVCGDQMNE. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08155 805 PANTHER OS01G0519700 PROTEIN 530 659 - -
Seca4g08155 805 MobiDBLite consensus disorder prediction 720 763 - -
Seca4g08155 805 SUPERFAMILY DNA-binding pseudobarrel domain 77 161 IPR015300 -
Seca4g08155 805 Pfam MULE transposase domain 452 528 IPR018289 -
Seca4g08155 805 ProSiteProfiles Zinc finger SWIM-type profile. 608 640 IPR007527 GO:0008270
Seca4g08155 805 Coils Coil 701 721 - -
Seca4g08155 805 SMART 26again6 615 642 IPR006564 GO:0008270
Seca4g08155 805 Pfam FAR1 DNA-binding domain 242 332 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08155 Seca-Chr4 193118938 193123084 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g08155 FAR1 5.6e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08155 - - mtr:120580664 364.77