Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08142 ATGAGAGGCGGCGGCGGAGGAGGCGGAGAAATCGTGGAGGTGCAAGGAGGGCACATTGTTCGATCGACGGGGAGAAAGGACCGTCACAGCAAGGTATGCACCGCGAAAGGCCCACGAGACCGCCGAGTGAGACTTTCGGCCCACACCGCGATCCAATTCTACGACGTGCAGGACCGATTGGGCTACGACAGGCCCAGCAAGGCAGTGGACTGGCTCATAAAAAAAGCCAAAGCTGCCATCGACGAACTCGCTGAGCTTCCCGCATGGAACCCCACCGCCACGTGCTCATCTGCACCACAACAACAAGAGTCACAGCAGCAGCAGCAACATCACATGGTCCACCGGCAATCACCGGTGGACGACCCTGTAATTGCTTCCAGTAGCCGCAACGTGGCGGTGGGTGGAAGAATATCAGAACAATTCCCCTCCCTCTCGCAGCAATTGGATAACAACACTGACGGTAGTGGGAAATACAAATACAACAGTGGTGGTTCTGGTTTTCTTCCATCGTCATTGGACACAGACATTGCGGATACTATTAAGTCTTTCTTTCCGATGGAGACAGCTACGACGTCGTTTCAGAGCTATGCGCCACCGCCAGATTTGTTGTCACGAACAGCAAGCGGTGGTAGCCAGCAAGATCTGAGACTCTCATTGCAGTCATTTCAGGACCCTATTTTACTTCACCATCACCAACAGGCTCAGAACCACCATGAACAGGTACTTTTTGCCGGAACCGCCGCGCTTGGCTTTGACGGCGGTTCCTCTACCGGGTGGTCTGAACAGCAGCACCAGCAGCAGCAGGAGGAAAATGAGCATAGTAGGTTGCATAGAATGGTGGCTTGGAATGCGAATGCTGCAGATGCTAGTAACAGTGGCCATGGTGCTGGGTTTGTTTTTAGTGCACAGTCACCGGCGATGGTGCCGGCGTCGGTGTTTGGCCATGGCCATGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCATTTGGTTCGTGCTTGGATAGACCCTTCCATTGCGACGGTAGCGGATCACCACCACCATCACTACCTCTCGCCGGCGATCCATCAGGCTTCTGTCTCAGGTGGCTTCTCCGGCTTCCATGTACCAGCACGAATTCAGGGTGAAGAGGAACACGACGGCGTATCTGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1200 0.545 MRGGGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWNPTATCSSAPQQQESQQQQQHHMVHRQSPVDDPVIASSSRNVAVGGRISEQFPSLSQQLDNNTDGSGKYKYNSGGSGFLPSSLDTDIADTIKSFFPMETATTSFQSYAPPPDLLSRTASGGSQQDLRLSLQSFQDPILLHHHQQAQNHHEQVLFAGTAALGFDGGSSTGWSEQQHQQQQEENEHSRLHRMVAWNANAADASNSGHGAGFVFSAQSPAMVPASVFGHGHGQYFSQRGPLQSSNTHLVRAWIDPSIATVADHHHHHYLSPAIHQASVSGGFSGFHVPARIQGEEEHDGVSDKPSSASSDSRH. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08142 399 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 329 IPR005333 GO:0003700
Seca4g08142 399 MobiDBLite consensus disorder prediction 91 123 - -
Seca4g08142 399 MobiDBLite consensus disorder prediction 1 31 - -
Seca4g08142 399 Pfam TCP family transcription factor 24 125 IPR017887 -
Seca4g08142 399 MobiDBLite consensus disorder prediction 136 157 - -
Seca4g08142 399 ProSiteProfiles TCP domain profile. 25 83 IPR017887 -
Seca4g08142 399 MobiDBLite consensus disorder prediction 378 399 - -
Seca4g08142 399 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08142 Seca-Chr4 192208856 192210076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08142 6 399 TCP Transcription Factor Family AT3G15030 46.759 5.31e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca4g08142 TCP 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08142 - - mtr:25502512 461.455