Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08139 ATGAACATGGCTTCCCCAAATATCTTCCTCCTTTCGGTCCTTGTTGCCTTTTGCTTCACCTATTTAGCTTTTGGAGCCACTCTGCCAGAAGATGAAGTGGAAGCTCTGAAGGACATAGGTAAGAGAATTGGGAAGAAAGATTGGGATTTCAGTGTAGATCCGTGCAGCGGAGAACGTAACTGGACATCACCTAAAGTGAGAGGGAACGAAAATAATGTCACCTGCAATTGCTCCTTTGTCATTGGCACCATCTGCCATGTTACTAACATAGTTTTGAAGGCACAAAATCTCCCAGGCAGTCTCCCGCCAGAACTGGTCAGGTTGCCTTACCTTCAACGCATTGACCTTAGTCGCAATTACCTCAACGGTACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTGTTTACATTTCCCTGAATGAAAATAGAGTATCAGGTTCAATCCCAGTAGAGCTAGCAAACATCACCACTCTACAAAGCTTGAGCCTGGAGTTCAACCAACTGTCTGGAAATCTTCCTCCTGAGCTTGGGAGTTTTCCCAAAATTCAAAGATTGCTACTTACCTCCAACAATTTTACTGGAGAAATACCAGCAACATTTGCCCAGCTCACAACCTTGCTGGATGTCCGAATTGGAGACAATAAATTCTCTGGAAAGATTCCTGATTTTATTCAAAGCTGGACAAATCTCCAGAAACTAGTGATTCAAGGGACTGGATTAAGTGGGCCAATTCCTTCCGGAATTTCACTTCTGGAAAATTTAACTGATTTGTATGTATGGAGAATTAGTGATCTAAATGTATCTGAATATTTTCCTTTTCCACAACTCAATAATATGACAAATTTGAACATTTTGATTCTGAGGAGTTGCAACATTAATGGAACAATACCTGAATATCTTGGGACAATAACAAGCTTAGAAACCTTAGACCTCAGCTATAACAAATTAAGTGGAGAAATTCCAAGAAGCTTTGAATATGGCCTAAGAAACACAAATTATATATATTTAACTGGAAACCTTCTCACTGGACCAGTGCCTGCATGGACAGAGAAAGCAAAAAATATAGATCTTTCATACAACAACTTCACCATTGGAAGCCAAGGGCAGCATGCATGTCAACAGGAGAATGTGAACTTGTTTGCTAGCTCTTCAATGGGCAATAACTCACAAACAGTCTCTTGTTTAGAAAGCATTGCCTGTCCTAAGGTCTCGTACTCTCTTCACATAAATTGTGGTGGAAAGCAAGTAACAATCAATGGAAGTGAAACATATGGTGCTGATACAGACACAGCAGGACCAGCTAGATTCCACCTTGGTGGAACTAACTGGGCATTTAGCAGCACTGGTCACTTCTTGGATAATGATCGTGGAGACTATTCTATTTGGCCAAGTCAATCTAACCTTTCCATGACCAATGCTGAATTATACATGGATGCGCGTGTTTCTCCCATTTCTCTGACTTATTATGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTACACTTTGCAGAAGTCATGTTCACTGATGATCAAACATATAACAGCCTAGGAAGGCGTGTATTTAATGTCTACATTCAGGGAAATCTGGTGCTGAAGGATTTCAATATTGCAGAAGAAGCAGGGGGAGTTAATAAGGCAGTCACAAAAGCATTCACTGTTGTGATTAGTAGTAACACATTGGATATCCGCTTATATTGGGCTGGAAAAGGGACAATTGGAATTCCATTTAAATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGAATCCTGACTTCACACCTCCCTCAAAAAAGGGAAGTAGCATGTCTGCAGGGGCTGTGGTTGCAATTGTGGCTGCTGTAGTAGTTATTTTCATCCTGGGGTTTGGTATACTTTGGTGGAGAGGTTGTCTAGGACAGAAAAGTTCATTATCAAGAGAGCTAAAGGGTTTAGATCTCCAAACGGGTTTGTTCACCTTACGACAAATCAAAGCAGCAACAAACAACTTCAATATTGCTAATAAGATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGAAATTTATTGGATGGGACAATAATAGCAGTCAAGCAGCTCTCCTCGAAATCAAGGCAAGGGAATCGTGAGTTTATAAATGAGATAGGCTTGATTTCAGCTTTGCATCACCCTTGTCTTGTTAAACTCTATGGCTGTTGTGTTGAGGGAGATCAACTGTTGTTGGTATATGAATATATGGAAAACAATAGCCTTGCCCGTGCTTTATTTGACTTTGTATTAAATGAATGGATTTTAAAGAAAGAAAAGGCACATCTATTGAAAGCGAAAGGTAATCTAATGGATCTAGTTGATAAAAGATTGGGTTTGGACTTCAACAAAGATGAGGTAAACATGATGATCAATGTGGCTCTTCTATGCACCAATGCCACTGCCTCCCTCAGGCCTACAATGTCATCAGTATTAAACATGCTTGAGGGCAGATCTGTTGTACTAGAGGTAGTTCCAGAGCCGAGTGAGGTATTGGATGAGAAGAAGTTAGAGACCATGCGACGATTTTACCATGAGATAGAAGAAAATGAGTTGAGTGAGACTCAGGACCAAAGTATCTCAGTGGATGACCCATTGATTGCTTCATCTACATCAGTAGATCTCTATCCAATAAACCTGGATTCTTCTTACTGGGAGAAAAGAGGATAG 2688 0.4055 MNMASPNIFLLSVLVAFCFTYLAFGATLPEDEVEALKDIGKRIGKKDWDFSVDPCSGERNWTSPKVRGNENNVTCNCSFVIGTICHVTNIVLKAQNLPGSLPPELVRLPYLQRIDLSRNYLNGTIPKEWGSMTNLVYISLNENRVSGSIPVELANITTLQSLSLEFNQLSGNLPPELGSFPKIQRLLLTSNNFTGEIPATFAQLTTLLDVRIGDNKFSGKIPDFIQSWTNLQKLVIQGTGLSGPIPSGISLLENLTDLYVWRISDLNVSEYFPFPQLNNMTNLNILILRSCNINGTIPEYLGTITSLETLDLSYNKLSGEIPRSFEYGLRNTNYIYLTGNLLTGPVPAWTEKAKNIDLSYNNFTIGSQGQHACQQENVNLFASSSMGNNSQTVSCLESIACPKVSYSLHINCGGKQVTINGSETYGADTDTAGPARFHLGGTNWAFSSTGHFLDNDRGDYSIWPSQSNLSMTNAELYMDARVSPISLTYYGFCLGNGNYTVNLHFAEVMFTDDQTYNSLGRRVFNVYIQGNLVLKDFNIAEEAGGVNKAVTKAFTVVISSNTLDIRLYWAGKGTIGIPFKSVYGPLISAISVNPDFTPPSKKGSSMSAGAVVAIVAAVVVIFILGFGILWWRGCLGQKSSLSRELKGLDLQTGLFTLRQIKAATNNFNIANKIGEGGFGPVYKGNLLDGTIIAVKQLSSKSRQGNREFINEIGLISALHHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFDFVLNEWILKKEKAHLLKAKGNLMDLVDKRLGLDFNKDEVNMMINVALLCTNATASLRPTMSSVLNMLEGRSVVLEVVPEPSEVLDEKKLETMRRFYHEIEENELSETQDQSISVDDPLIASSTSVDLYPINLDSSYWEKRG. 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08139 895 Pfam Leucine rich repeat 109 169 IPR001611 GO:0005515
Seca4g08139 895 Pfam Leucine rich repeat 282 342 IPR001611 GO:0005515
Seca4g08139 895 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 753 - -
Seca4g08139 895 Pfam Protein kinase domain 668 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08139 895 PRINTS Leucine-rich repeat signature 111 124 - -
Seca4g08139 895 PRINTS Leucine-rich repeat signature 304 317 - -
Seca4g08139 895 Gene3D Phosphorylase Kinase; domain 1 636 740 - -
Seca4g08139 895 Gene3D Ribonuclease Inhibitor 33 197 IPR032675 -
Seca4g08139 895 Gene3D Ribonuclease Inhibitor 265 380 IPR032675 -
Seca4g08139 895 Gene3D Ribonuclease Inhibitor 198 264 IPR032675 -
Seca4g08139 895 Pfam Malectin domain 407 590 IPR021720 -
Seca4g08139 895 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 267 - -
Seca4g08139 895 SUPERFAMILY L domain-like 69 347 - -
Seca4g08139 895 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 742 - -
Seca4g08139 895 Gene3D - 404 595 - -
Seca4g08139 895 Gene3D Transferase(Phosphotransferase) domain 1 741 832 - -
Seca4g08139 895 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 595 - -
Seca4g08139 895 SUPERFAMILY Protein kinase-like (PK-like) 650 764 IPR011009 -
Seca4g08139 895 ProSiteProfiles Protein kinase domain profile. 667 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08139 Seca-Chr4 192068225 192079785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08139 755 853 Receptor kinase-like Gene Family AT1G53420 38.835 2.37e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08139 Malectin 7.3e-43 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08139 - - gmx:732563 1060.06