Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08138 ATGACTCTTTTCCCTCTATGTTCTCTTCTTTTCCTTCTCCCTCTCTGCTTTCCATCATTTGCTCTGGGAGCCACTCTGCAAAAAGATGAAGTGGAAGCTTTGAAGGACATAGGAAAGACACTTGGGAAGAAGGATTGGGACTTCACAGTGGATCCATGTAATGGAAAAAATAACTGGATATCACCAACTCAATTACAAGGAGCTGAAAATGCTGTGACCTGCAATTGCTCTTTCAACAATAACACAGTCTGCCATGTTGTAAGCGTTGTTTTAAAAGCACAAAATCTTTCTGGAACTCTTCCACCAGATCTTGTGAGGTTGCCTTATCTCCAAGAAATTGATCTCACCCTCAACTACCTTAATGGTACAATTCCTAAACAATGGGCCACACTCAATCTTGTCAACATTTCCTTCTATGGAAACCGTCTATCGGGTCCAATTCCAAAGGAGCTTGGGAGGATCACTACTCTCAAAAGCTTGGTATTGGAATTCAATCAATTATCTGGAAATCTTCCTCCAGAGCTTGGGAATCTTCCTCAGCTTGAAAGACTGCTTCTTAACTCCAATAATTTCACTGGAGAGTTACCTGCAGCATTTGCAAGGCTAACTAGATTGAAGCAATTTCGAATTGGTGACAACCAATTTTCTGGAGCAATACCCAAATTTATACAGAACTGGATAAATCTTGAGATGCTAGTGATTCAAGGGAGTGGTTTGAGTGGGCCAATTCCTTCTGGAATTTCACTTCTAAGAAACCTTACTGACTTAACTATTACAGACTTGAATGGACCTGGTTCACCTTTTCCAAACCTAGAAAATATGCCAAAATTGTCAAAACTGATATTGAGGAGTTGCAATATTATTGGAGAAGTGCCTGACTATCTTGGAAATTTTACTAATCTGAAAGTGATTGACGTCAGCTACAACAAATTAAGTGGACAAATCCCCATGAGTTTTGATGGTCTAAAGAACATGTATATGCTAGTTTTATCTCGGAATCTTTTGTCTGGATCGCTGCCTGAGTGGATTGATAAACCTGACTTTGTGGATCTCTCCTATAACAACTTCACTATCACAAACTATGAGCAGCAGACTTGTCAACAAGGCACCGTGAACTTGTTTGCCTCCTCCTTGAATGGCAACAACTTAGGAAATATTTCATGTTTGGCAAACTATCGCTGTCCTAAAACTTCATACTCTCTCCATATAAATTGTGGTGGAAAGCTGGTAACTTCTAGTGGAAATAAGACATATGAGGATGATTCAAGTGAAATGGGACCAACAAGGTTTCGTCAAACTGGAACAAATTGGGCAATTATCACTGCTGGTCACTTCTTTGATAGTGGTCGCTCTGACTACTACACATGGTCTAATACAACCAAGCTTGCTGTGGACAATGCTGAATTGTACATGGATGCACGTGTTTCTCCAAATTCTCTTACTTACTATGGATTTTGCCTTGGAAATGGAAACTACACAGTGAATCTCCATTTTGCAGAAATAATGTTCACTGATGACAAAACTTATAGCAGTCTTGGACGACGTGTATTTGACATCTACATTCAGAGAAAGTTGGTGTCAAAGGATTTCAATATTGTAAAAGAAGCAGGCGGTGTTGGTAAGGCGGTCATTAAAAAGTTCACTGCCATTGTGACTAGTAACGCCTTGGAGATCCGCTTATATTGGGCTGGGAAAGGAACAACTACTATCCCCTTTGGATCAGTATATGGTCCTCTTATATCAGCTATATCAGTTTATCCTGACTTTATACCCCCATTGGAAAATAATACAAGCATTTCAGCAGGGGTTGTGGTTGCAATTGTGGCTGCAGCAGTTATTGTTATCATCTTAGTATTTGGTATACTGTGGTGGAAGGGTTGTTTCAGACTGAAAAGTTCAGGGGCAAGAGATCTAAAGGGTTTAGGTTCACAAACTGGTTTATTTACATTGCGGCAAATCAAAGCAGCAACAAACAACTTTGATGAGTCTTTCAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGCATTTTGTCAGATGGAAGAATAGTAGCAATTAAGCAACTTTCTTCTAAATCAAGGCAAGGAAATCGAGAATTTATAAATGAGATAGGCTTGATTTCTGCTCTGCAACACCCTAATCTAGTTAAGCTCTACGGGTTTTGTACGGAGGATGGCCAGTTGCTGCTGATATATGAATACATGGAAAACAATAGCCTGGCTCATGCTTTATTTGTCAAAAAGGAAGACCCAGAGAAACGTCAATTGAAATTGGATTGGCAAACAAGGCAGAGGATTTGTATTGGTATTGCTAAAGGTTTAGCATACCTTCATGGAGAGTCAAGGCTTAAGATTGTTCATAGGGACATCAAGGCTACTAATGTTTTGCTGGATAAAGATCTCAACCCAAAGATTTCTGATTTTGGTTTGGCCAAGCTCAATGAAGAGGACAAAACCCATATGAGCACCAGAATAGCTGGCACTTATGGGTACATGGCTCCTGAGTATGCAATGCATGGTTATTTGACGGATAAAGCTGATGTTTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGAACCAACAACACCATTAGCCATCCTCAGGAAGAATGCTTCTGTCTTCTAGATTGGGTGCATCTCTTGAAAGACAAAGGTAATGTAATGGATCTTGTTGACTGGAGGTTGGGTGGAGACTACAACAAAGATGAGGTAATGGTGATGATCAATGTGGCTCTTCAATGTACAAGTGTCTCGCCAATGCTGAGGCCCTCTATGTCTTCAGTGGTAAGCATGCTTGAAGGAAAAACTATTGTTCAAGATGTGGTGCCAGACACAAGAGAGGTATTGGATGATAAGAAATTTGAGGTGATGCAACAGTACTACAAACAAAGAGGAGAAAATAACAAAACTGAGGCTCAAAGCCAAAGTATCCCAACAGAAGAATCTTATGCATTTATATCTGATACAGATTCTTCTTATTGGGAAACCAGAAATTAG 3006 0.3985 MTLFPLCSLLFLLPLCFPSFALGATLQKDEVEALKDIGKTLGKKDWDFTVDPCNGKNNWISPTQLQGAENAVTCNCSFNNNTVCHVVSVVLKAQNLSGTLPPDLVRLPYLQEIDLTLNYLNGTIPKQWATLNLVNISFYGNRLSGPIPKELGRITTLKSLVLEFNQLSGNLPPELGNLPQLERLLLNSNNFTGELPAAFARLTRLKQFRIGDNQFSGAIPKFIQNWINLEMLVIQGSGLSGPIPSGISLLRNLTDLTITDLNGPGSPFPNLENMPKLSKLILRSCNIIGEVPDYLGNFTNLKVIDVSYNKLSGQIPMSFDGLKNMYMLVLSRNLLSGSLPEWIDKPDFVDLSYNNFTITNYEQQTCQQGTVNLFASSLNGNNLGNISCLANYRCPKTSYSLHINCGGKLVTSSGNKTYEDDSSEMGPTRFRQTGTNWAIITAGHFFDSGRSDYYTWSNTTKLAVDNAELYMDARVSPNSLTYYGFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYIQRKLVSKDFNIVKEAGGVGKAVIKKFTAIVTSNALEIRLYWAGKGTTTIPFGSVYGPLISAISVYPDFIPPLENNTSISAGVVVAIVAAAVIVIILVFGILWWKGCFRLKSSGARDLKGLGSQTGLFTLRQIKAATNNFDESFKIGEGGFGPVYKGILSDGRIVAIKQLSSKSRQGNREFINEIGLISALQHPNLVKLYGFCTEDGQLLLIYEYMENNSLAHALFVKKEDPEKRQLKLDWQTRQRICIGIAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLNEEDKTHMSTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGTNNTISHPQEECFCLLDWVHLLKDKGNVMDLVDWRLGGDYNKDEVMVMINVALQCTSVSPMLRPSMSSVVSMLEGKTIVQDVVPDTREVLDDKKFEVMQQYYKQRGENNKTEAQSQSIPTEESYAFISDTDSSYWETRN. 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08138 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 195 262 - -
Seca4g08138 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 966 - -
Seca4g08138 1001 SUPERFAMILY L domain-like 74 357 - -
Seca4g08138 1001 ProSiteProfiles Protein kinase domain profile. 660 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08138 1001 Pfam Malectin domain 400 583 IPR021720 -
Seca4g08138 1001 Gene3D Ribonuclease Inhibitor 259 372 IPR032675 -
Seca4g08138 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 947 - -
Seca4g08138 1001 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 268 359 - -
Seca4g08138 1001 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 30 189 - -
Seca4g08138 1001 MobiDBLite consensus disorder prediction 968 987 - -
Seca4g08138 1001 Gene3D Phosphorylase Kinase; domain 1 628 735 - -
Seca4g08138 1001 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 398 588 - -
Seca4g08138 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Seca4g08138 1001 Pfam Protein kinase domain 663 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08138 1001 SMART serkin_6 660 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08138 1001 CDD STKc_IRAK 666 937 - -
Seca4g08138 1001 SUPERFAMILY Protein kinase-like (PK-like) 644 938 IPR011009 -
Seca4g08138 1001 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 629 735 - -
Seca4g08138 1001 Gene3D Ribonuclease Inhibitor 27 258 IPR032675 -
Seca4g08138 1001 Gene3D - 396 588 - -
Seca4g08138 1001 Pfam Leucine rich repeat 275 335 IPR001611 GO:0005515
Seca4g08138 1001 Gene3D Transferase(Phosphotransferase) domain 1 736 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08138 Seca-Chr4 192026422 192036586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08138 20 969 Receptor kinase-like Gene Family AT1G53420 53.958 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08138 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08138 - - gmx:100786496 1382.85