Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08136 ATGTGTCCTAAAAATTTGTACTCTCTCTATATAAATTGTGGTGGAAATCTCGTAAATTCCATGGGAAACAAGACATATGATGATGATTCGTTTGAGATGAAACCGGCAATGTTTCATAAAGCTACGAACTGGGCAATTATTACTACTGGTCATTTCTTTTATAATGGTAAACGCTCTGACCACTACTATCGGTCTAATACAACAAAGCTTGCTATGGACAATGCTGAACTATATATGGACGCACGCATTTCTCCAAATTCTCTAATTTACTATGGATTTTGCCTTGAGAATGGAAACTACACAGTGAAGCTTCACTTTGCAGAAATAATGTTCACTGGTGATAAAACGTATAGCAGCCTTGGAAGGCGTGTATTTGACATCTACATCCAGAGAAAGTTGGTGGCGAAGGATTTCAACATTGTAAAAGAAGCGGGAGGTGTTGGTAAGCCATTCATTAAAAATTTTAGTGTTGTAGTGACTAGTAATGCCCTAGAGATTCGCTTATATTGGGCTGGGAAAGGAACGACTATGATCCCATTTACTACCATCTCATTTGGATCGGTATATGGTCCTCTTATATCAGCTATATCTGCAGTTAAGCATGACTCTATTCTCCCATTGGAATTGGAAAATAATAATAGAAGCATACCCGTAGGGGTTGTGATTGCGATTGTGGCTGTAGGAGCAATTATTATCATAATGGTATTTGGTATACTGTGGTGGAAGGGTTGTTTAAGACTAAAAAGTGTAGGGGCAGAAGAGCTAAAGGGTTTAGGTTCACAAATTGGTTCATTTACATTACGGCAAATCAAAGTAGCAACAAACAACTTTGATAAGTCATTCAAAATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGCGTTTTGTCAGATGGAAGAATAGTAGCAATTAAGCAACTTTCTTCTAAATCAAGGCAAGGAAATCGAGAATTTATAAATGAGATAGGCTTGATTTCAGCTTTGCAACACCCTAATCTAGTTAAGCTCTATGGATTTTGTATGGAGGGTGATCAATTGTTGCTGATATATGAATACATGGAAAACAATAGCCTTGCTCATGCTTTATTTGCAAAAAAGGAAAGCCCGGAGAAATGTCAATTGAAATTGGATTGGAAAACAAGACAAAGAATTTGTGTTGGTATTGCTAAAGGTTTAGCTTACCTTCATGAAGAATCAAGATTTAAGATTGTTCATAGGGACATCAAGGCCACTAATATTTTGCTGGATAAAGATCTCAAACCAAAGATTTCTGATTTTGGTTTGGCCAAACTCAATGAAGAGGATAATACCCATATAAGCACCAGAATAGCTGGCACTTATGGGTACATGGCCCCTGAGTATGCAATGCATGGTTATTTGACTGACAAGGCCGATGTTTATAGTTTTGGAATTGTTGTTTTCGAAATTGTTAGTGGAATCAGCAACACCATTAGCCATCCTCGAGAAGAATGCTTCTCTCTTCTTGATTGGGTGCATCTCTTGAAACAAAAAGGGAATATGATGGATCTTGTTGATCGGAGGTTGGGTGAAGACTTCAACAAAGATGAGGTCATGGTGATGATCAATGTGGCTAATCTATGCACCAGTTTGTCTCCAATGTTGAGGCCCACAATGTCTTCAGTGGTAAACATGCTTGAAGGAAGGACAATTGTTCAAGAGGTGAAGTCAGACACAAGCAATGTGTTAGATGATAAAAAATTTGAGGTGATGCGACAATACTTCCAAGAAAGAGGAGAAAATAATATAATTGAGTCTCAAAGCCAAAGCATTGCAATAGATGAATCCCATGCATTAATATATGATACGGATTCCTTTCAAAGGGAAAACATAAATTAG 1857 0.377 MCPKNLYSLYINCGGNLVNSMGNKTYDDDSFEMKPAMFHKATNWAIITTGHFFYNGKRSDHYYRSNTTKLAMDNAELYMDARISPNSLIYYGFCLENGNYTVKLHFAEIMFTGDKTYSSLGRRVFDIYIQRKLVAKDFNIVKEAGGVGKPFIKNFSVVVTSNALEIRLYWAGKGTTMIPFTTISFGSVYGPLISAISAVKHDSILPLELENNNRSIPVGVVIAIVAVGAIIIIMVFGILWWKGCLRLKSVGAEELKGLGSQIGSFTLRQIKVATNNFDKSFKIGEGGFGPVYKGVLSDGRIVAIKQLSSKSRQGNREFINEIGLISALQHPNLVKLYGFCMEGDQLLLIYEYMENNSLAHALFAKKESPEKCQLKLDWKTRQRICVGIAKGLAYLHEESRFKIVHRDIKATNILLDKDLKPKISDFGLAKLNEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVFEIVSGISNTISHPREECFSLLDWVHLLKQKGNMMDLVDRRLGEDFNKDEVMVMINVANLCTSLSPMLRPTMSSVVNMLEGRTIVQEVKSDTSNVLDDKKFEVMRQYFQERGENNIIESQSQSIAIDESHALIYDTDSFQRENIN. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08136 618 ProSiteProfiles Protein kinase domain profile. 277 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08136 618 SUPERFAMILY Protein kinase-like (PK-like) 261 555 IPR011009 -
Seca4g08136 618 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 246 352 - -
Seca4g08136 618 CDD STKc_IRAK 283 554 - -
Seca4g08136 618 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 41 594 - -
Seca4g08136 618 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 6 201 - -
Seca4g08136 618 Pfam Protein kinase domain 279 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08136 618 Gene3D Phosphorylase Kinase; domain 1 244 352 - -
Seca4g08136 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Seca4g08136 618 FunFam Putative LRR receptor-like serine/threonine-protein kinase 353 564 - -
Seca4g08136 618 SMART serkin_6 277 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08136 618 Pfam Malectin domain 8 196 IPR021720 -
Seca4g08136 618 Gene3D Transferase(Phosphotransferase) domain 1 353 578 - -
Seca4g08136 618 Gene3D - 6 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08136 Seca-Chr4 191942261 191947943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08136 2 586 Receptor kinase-like Gene Family AT1G53420 55.254 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08136 Pkinase 5.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08136 - - lang:109352857 885.174