Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08135 ATGATGAGTGCCTTCTTCCCTCAACTTCCCCTTCTTTATCTCCTCCCTTTTTGCCTTGCAATATCATTTGCTTTTGGAGCCACTCTGCAGAAAGATGAAGTGCAAGCTCTGCAAGACATAGCTAGCACGATTGGGAAAGAGAATTGGGACTTCAGCGTGGATCCATGTAGCGGAAAGAGTAACTGGACATCCCCAACTCAATTGCAAGGATCAGAAAATGCTGTGACCTGTAATTGTTCTTTCGCCAATCACACCGTTTGCCACGTTGTCAGCATTGTTTTGAAAGCTCAAAATCTTTCGGGTAGTGTTTCACCGGAGCTTGCCAGGTTGCCTCATCTCCAAGAAATTGATTTCACCCGCAACTACCTTAATGGTACAATCCCTAAGCAATTGGCCACCTTAAATCTTGTCAACATTTCCTTTTATGGAAACCGCCTAACGGGTCCAATCCCAAAGGAGCTTGGAAACATCACTACTCTCAAAAGTTTGGTATTGGAGTTCAATCAATTATCCGGAAATCTTCCTCCAGACCTGGGGAATCTTACCCAGATTGAAAGACTGCTTCTTACCTCCAACAATTTCACTGGAGAGTTACCTGCAACATTGGCTAGGCTCACTACATTGAAGCATGTTCGAATTGGCGATAATCAGTTCTCTGGAGCAATACCCAATTTTATACAGAGCTGGATAAATCTTGAGACACTCGTGGTACAGGGGAGTGGTTTGAGTGGACCAATTCCTTCTGGAATTTCACTTTTGACAAACCTTTCTGATTTGAGAATTACTGACTTGAATGGATCTGATTCACCTTTTCCACAACTTAATAATATGACAAATTTGGAAACACTAATATTGAGGAGTTGCAATATTAATGGAGCCGTGCCTGAATATCTTGGAAAGTTTACTAGTTTGCAAGTATTAGACCTCAGCTACAACAACCTAAGTGGACCAATTCCGAGCAGTTTTGATGGTCTACAGAACTTGGATATGCTATTTTTAGCAGGGAATCTTCTCACTGGATCGCTACCTCAGTGGATAGATAAACCAGACTTTGTTGATCTCTCATATAACAACTTCAGCATCAGGAGCGCAGAGCAGCTGACTTGTCAACAGGGAAGCGTGAACTTGTTTGCATCCTCTTTGAATGGAAACAGCTTAGGAAATATTTCATGTTTGTCAAACATTCAGTGTCCAAAAGCTTCCTATTCTCTCTATATAAATTGTGGTGGAAAGCATATAATTTCCGATGGAAATAAGACATATGATGATGACTCAAATGATACTGGACCTGCAAGATTTCGTCAAACTGGAACGAATTGGGCACTCATTACTTCTGGTCACTTCTTTGATAGTAATCGCCGGGACTACTATAATTGGTCTAATACAAGTAACCTTGCAGCAGTGGAAAATGCTGAACTGTACATGGATGCACGTGTTTCTCCCAACACTTTGACTTATTACGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTCCATTTTGCAGAAATAATGTTTACTGATGATAAAACATATAGCAGCCTTGGAAGGCGTGTATTTGACATCTACATTCAGAGAAAGTTGGTGGTTAAGGATTTCAATATTGTAGAAGAAGCAGGGGGTGTAGGTAAGGCAATCATAAAAAAATTTACTGCTGTTGTTACTAGTAATGCCTTGGAGATCCGCTTATATTGGGCTGGGAAAGGGACAACTTCTATCCCATTTGGTTCAGTATATGGTCCTCTTATATCAGCTATAGCTGTTGATCCTGACTTTACACCCCCATTGGAAAATGGTAGTAGCATATCTACAGGGGTTGTGGTTGCAATCGTGGTTGCTGGAGCACTTATTATCATTTTGGTGTTAGGTATACTGTGGTGGAAGGGCTGTTTAGGACTTAAAAAACCAGTGGCCAAAGAGCTAAAGGGTTTAGATTCACAAACTGGTTTATTTACCCTACGACAAATCAAAGCAGCAACAAACAACTTTGACAAAACCTTCAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGCGTTCTATCAGATGGCACTATAGTAGCAGTTAAGCAGCTTTCTGCTAAATCAAGACAAGGCAATCGTGAATTCATAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCTAATCTAGTTAAGCTCTATGGTTGTTGTATGGAGGAGGATCAATTGTTGCTAATATATGAATACATGGAAAACAATAGTCTTGCCCATGCTTTATTCCGTAAAAATGATGACCCTGGGAAAAGTCAATTAAGAGTGGATTGGCAAACGAGGAAGAGGATTTGTGTTGGTATTGCAAAAGGTTTGGCTTACCTTCATGAAGAGTCAAGACTCAAGATTGTTCATAGGGACATCAAGGCAACTAATGTATTGTTGGATAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTCAATGAAGAGGACAATACCCACGTGAGCACCAGAATAGCTGGCACTTATGGGTACATGGCTCCTGAGTACGCAATGCATGGTTATTTGACAGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGGACGAGCAACACCATTAGGCAGCCTATAGGAGAATGCTTATCTCTTCTTCATTGGGTTCATCTCTTGAAAGAAAGAGCTAATTTAATGGAGCTAGTGGATAAGAGGTTGGGTGAAGTCTTCAATAAGGAGGAGGTAATGGTGATGATTAATGTAGCTCTTTTATGCACCAACGTCTCCCCAACGCTCAGGCCAACCATGTCTTCAGTGGTTAGCATGCTTGAAGGTAGAACCATTGTTCAAGAGGTGGTGTCAAACACAACAGAAGCATTGGATGATAAGAAATTTGAGATGATGCGACAGTATTACCAACAGAGAGGAGAAAATAACATAGTTGAGACTCAGAGCCAGAGTGTCCCTACAGATGGAACTTCTATATTTATGTCTAATACGGATTCTTCTTTTGGGGAAATCAAAAGTTGA 3018 0.4085 MMSAFFPQLPLLYLLPFCLAISFAFGATLQKDEVQALQDIASTIGKENWDFSVDPCSGKSNWTSPTQLQGSENAVTCNCSFANHTVCHVVSIVLKAQNLSGSVSPELARLPHLQEIDFTRNYLNGTIPKQLATLNLVNISFYGNRLTGPIPKELGNITTLKSLVLEFNQLSGNLPPDLGNLTQIERLLLTSNNFTGELPATLARLTTLKHVRIGDNQFSGAIPNFIQSWINLETLVVQGSGLSGPIPSGISLLTNLSDLRITDLNGSDSPFPQLNNMTNLETLILRSCNINGAVPEYLGKFTSLQVLDLSYNNLSGPIPSSFDGLQNLDMLFLAGNLLTGSLPQWIDKPDFVDLSYNNFSIRSAEQLTCQQGSVNLFASSLNGNSLGNISCLSNIQCPKASYSLYINCGGKHIISDGNKTYDDDSNDTGPARFRQTGTNWALITSGHFFDSNRRDYYNWSNTSNLAAVENAELYMDARVSPNTLTYYGFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYIQRKLVVKDFNIVEEAGGVGKAIIKKFTAVVTSNALEIRLYWAGKGTTSIPFGSVYGPLISAIAVDPDFTPPLENGSSISTGVVVAIVVAGALIIILVLGILWWKGCLGLKKPVAKELKGLDSQTGLFTLRQIKAATNNFDKTFKIGEGGFGPVYKGVLSDGTIVAVKQLSAKSRQGNREFINEIGLISALQHPNLVKLYGCCMEEDQLLLIYEYMENNSLAHALFRKNDDPGKSQLRVDWQTRKRICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLNEEDNTHVSTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGTSNTIRQPIGECLSLLHWVHLLKERANLMELVDKRLGEVFNKEEVMVMINVALLCTNVSPTLRPTMSSVVSMLEGRTIVQEVVSNTTEALDDKKFEMMRQYYQQRGENNIVETQSQSVPTDGTSIFMSNTDSSFGEIKS. 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08135 1005 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Seca4g08135 1005 Gene3D Transferase(Phosphotransferase) domain 1 740 964 - -
Seca4g08135 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 592 - -
Seca4g08135 1005 Gene3D Ribonuclease Inhibitor 32 201 IPR032675 -
Seca4g08135 1005 Gene3D Ribonuclease Inhibitor 263 375 IPR032675 -
Seca4g08135 1005 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 951 - -
Seca4g08135 1005 Gene3D Phosphorylase Kinase; domain 1 633 739 - -
Seca4g08135 1005 SUPERFAMILY L domain-like 83 359 - -
Seca4g08135 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Seca4g08135 1005 CDD STKc_IRAK 670 941 - -
Seca4g08135 1005 Pfam Leucine rich repeat 278 338 IPR001611 GO:0005515
Seca4g08135 1005 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 634 739 - -
Seca4g08135 1005 Pfam Malectin domain 403 587 IPR021720 -
Seca4g08135 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 33 192 - -
Seca4g08135 1005 SUPERFAMILY Protein kinase-like (PK-like) 647 945 IPR011009 -
Seca4g08135 1005 SMART serkin_6 664 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08135 1005 ProSiteProfiles Protein kinase domain profile. 664 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08135 1005 Gene3D Ribonuclease Inhibitor 202 262 IPR032675 -
Seca4g08135 1005 Gene3D - 400 591 - -
Seca4g08135 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 971 - -
Seca4g08135 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 362 - -
Seca4g08135 1005 Pfam Protein tyrosine and serine/threonine kinase 669 939 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08135 Seca-Chr4 191841720 191855281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08135 21 973 Receptor kinase-like Gene Family AT1G53420 54.062 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08135 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08135 - - gmx:100798947 1443.71