Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08128 ATGTCTTCTTCCTCCCATGAAGTTATCCTCACCAGCTCCCCTGATGGTCCCATCATGGCCTATGAGGCTTCCACCGGCGCCGCCATTGCTCAGTTCACCGGCAGCCGGTCACCTTGCCGTGGCCTCACCATGGCAGGCCAAGGTCTCATTGTAGTCTCCCATGTTTTCTCAGACACAGGTGCTGGTTCAATCCACATCTATAATTGGTACACTTCAACTGTGTTCACCAACTACCCTGTCCCTGAACCTGTTGCCCCTCTTGCTGCTACCTCTGATGGTGCCTTTCTCTTTGCTGGTGGCATCTCAGGGACCATTCATTCTCTGTTACTCTCCACAGGGGATGTGATCAATTCATTCCCTGCTCACCCAAAACCTGTTTCCAGTCTCCATCTCAATGATGATGGGTCATTACTTATTTCAGCAAGTGATGATGGTACCATTGTTGTCATCCCAACTTTTCGCCTTGTTGAGGAACCCACCTTGGAATCATCCTTCTTAGACCCAAAAGACTTGATCTTGCACCATTGGAAGGCACATTCTGATTCAGTCACTGGTTTAAACTCTGGAATAGGGCTCTGCAGCTCTACATTGGTTTCTTGCTCCCTGGATTGCACATGCAAGTTTTGGAGTCTGGCGAATGGTGGGATTCTCATGCGAACTGTGGAGTTCCCTTGTGCCATTTTTGGGGTTACATTGGATTCAACTGAGTCTGAATTCTATGCTGGTGGGGCAGATGGATTGGTTTATAAGGGGTTGATTAAGGTTGGTAGTAGAAAAATGTTTGCAAAAGGGTATGAGTTAATCACTCTGCCTAAAAGCCATGGTGGGTCAATTGTGTCTGTGAATTTGGTGAACCAAGGGAAGAATTTGGTGTCTGCTGCTGAAGATGGGAGTGTTTGGATGTGGGATGTTGAGAAAGGAGAGATTGTTGTGGTTCTGGGGAATGACATGGGAAACATCAGTGATATGATAGTTGCCAGAGGAACTAGCGGGTATGGAATTGGAAGGGGGAACATTGTTGGTGGTGATGATGAAGATAGTGGTGGCTACACTTCTTCAGGGCTATGCGATGAAGAGATGATTACAACTCTGAAGCAAATCACAGAGCTTGGAAATATCTTGGATGTGCTGATACAGGACAAGAATAGAGCCATTGACTTGCTGGAATCTGCAATTGCCATGTATGAGAGGCTCTTAAAGCTTATTCTTAAGGAAGCTACGAAAGCCATGGAGGAGGTAGAAGAGGAAGAGGACAATGACGAAGAGGGAGAAGGGAAAGGAGATGAGGAGGAAGACAACAAGTGA 1305 0.4682 MSSSSHEVILTSSPDGPIMAYEASTGAAIAQFTGSRSPCRGLTMAGQGLIVVSHVFSDTGAGSIHIYNWYTSTVFTNYPVPEPVAPLAATSDGAFLFAGGISGTIHSLLLSTGDVINSFPAHPKPVSSLHLNDDGSLLISASDDGTIVVIPTFRLVEEPTLESSFLDPKDLILHHWKAHSDSVTGLNSGIGLCSSTLVSCSLDCTCKFWSLANGGILMRTVEFPCAIFGVTLDSTESEFYAGGADGLVYKGLIKVGSRKMFAKGYELITLPKSHGGSIVSVNLVNQGKNLVSAAEDGSVWMWDVEKGEIVVVLGNDMGNISDMIVARGTSGYGIGRGNIVGGDDEDSGGYTSSGLCDEEMITTLKQITELGNILDVLIQDKNRAIDLLESAIAMYERLLKLILKEATKAMEEVEEEEDNDEEGEGKGDEEEDNK. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08128 434 Gene3D - 1 160 IPR015943 GO:0005515
Seca4g08128 434 MobiDBLite consensus disorder prediction 409 434 - -
Seca4g08128 434 PANTHER WD-REPEAT PROTEIN 18 7 331 IPR045227 -
Seca4g08128 434 MobiDBLite consensus disorder prediction 411 434 - -
Seca4g08128 434 Pfam WD domain, G-beta repeat 173 210 IPR001680 GO:0005515
Seca4g08128 434 Pfam WD domain, G-beta repeat 115 149 IPR001680 GO:0005515
Seca4g08128 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Seca4g08128 434 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Seca4g08128 434 SMART WD40_4 169 210 IPR001680 GO:0005515
Seca4g08128 434 SMART WD40_4 263 303 IPR001680 GO:0005515
Seca4g08128 434 SMART WD40_4 112 151 IPR001680 GO:0005515
Seca4g08128 434 Coils Coil 378 423 - -
Seca4g08128 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 308 - -
Seca4g08128 434 Gene3D - 161 329 IPR015943 GO:0005515
Seca4g08128 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Seca4g08128 434 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 310 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08128 Seca-Chr4 191605261 191606565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08128 99 306 U-box Gene Family AT1G04510 25.806 8.17e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08128 K14829 - gmx:100785191 503.442