Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08127 ATGAAGATTCAGTGCAACGTTTGTGAAGCTGCAGAGGCTAAGGTTCTTTGCTGTGCGGACGAAGCAGCACTATGCTTGGAATGTGATAAGAAGGTTCATGCAGCAAACAAGCTTGCCAGCAAGCACCAGAGAGTTCCTCTTTCAATCTCTGCCTCTCACATGCCCAAGTGTGACATTTGTCAGGACACTGTTGGTTATTTCTTCTGTCTAGAGGATCGGGCTTTACTATGCAGGAATTGCGATGTGGCAATACACACAGCAAATGCCTTTGTTTCTAGTCATCAAAGGTTTCTTCTTACTGGTGTAAGAGCAGGCCTTGAAGCTACTGAGCCTGGTGCTTCCTCATCTTCTGAGAAGTCACATTCTGAAGAGAAAATGTCTGATGTTAAATCTTCTTCCATCTCTAGAAATGTTTCCTCCGTGCCCCAGCCACCCACTTTCAATGAAGTGTTACCAATTCAAGTTGTAATGGGGGAGTTTCCCCCAACTAAGGTGTCATATGGTGGTGGTTCTACTGCTGGAAGCATCTCACAGTGGCCCATTGAAGAATTTCTTGGAATAAATGAATTCAGTCAGAATTATAATTACATGGATGGATCATCCAAGGCTGACAGTGGTAAGCTTGGGGATTCAGATTCTTCTGTTTTAAGATCTAATGAAGAGGAAATGGATGATGATGACCTTTTGGGGCGCGTTCCAGATTCGTCCTGGACAGTTCCTCAGATCCCTTCCCCTCCTACAGCTTCAGGGTTATATTGGCCAAAAGACCCTCAGTGTACATCTGATAATGCTATGTTTGTTCCTAACATACACATTTCTCACATGCGAAAGCCCAACCATGCTCAGAATAATTTGAATTTTTCAAAACGGCAAAGGCAACGGTGA 885 0.4395 MKIQCNVCEAAEAKVLCCADEAALCLECDKKVHAANKLASKHQRVPLSISASHMPKCDICQDTVGYFFCLEDRALLCRNCDVAIHTANAFVSSHQRFLLTGVRAGLEATEPGASSSSEKSHSEEKMSDVKSSSISRNVSSVPQPPTFNEVLPIQVVMGEFPPTKVSYGGGSTAGSISQWPIEEFLGINEFSQNYNYMDGSSKADSGKLGDSDSSVLRSNEEEMDDDDLLGRVPDSSWTVPQIPSPPTASGLYWPKDPQCTSDNAMFVPNIHISHMRKPNHAQNNLNFSKRQRQR. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08127 294 CDD Bbox1_BBX-like 5 47 - -
Seca4g08127 294 MobiDBLite consensus disorder prediction 219 243 - -
Seca4g08127 294 Gene3D Classic Zinc Finger 1 93 - -
Seca4g08127 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Seca4g08127 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca4g08127 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca4g08127 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Seca4g08127 294 MobiDBLite consensus disorder prediction 276 294 - -
Seca4g08127 294 MobiDBLite consensus disorder prediction 109 142 - -
Seca4g08127 294 FunFam B-box zinc finger protein 22 1 93 - -
Seca4g08127 294 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Seca4g08127 294 CDD Bbox1_BBX-like 56 99 - -
Seca4g08127 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
Seca4g08127 294 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08127 Seca-Chr4 191467300 191472177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08127 1 270 C2C2-CO-like Transcription Factor Family AT1G78600 48.701 4.90e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g08127 zf-B_box 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08127 - - gmx:100808889 456.447