Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08113 ATGCCAGGGAACAAGTACAACGGCGATTCTAATAACCACATACCAGATCGTGTTGAACGGCTTTTGAGGGATAGGGAGTTGAGGAAAAACACGAGGGCGATTTTGAATGAGTCGAGTGATAACAGTATTAGTAACAACAGTAATAATGAAGGTTTAGAGCAGGAGCAGAGGTTGAAGGAAGAGGAAAAGTTAGGGGAAGTTGAAGGGGTGGGAGGGGGAAGGGGTGGGGAAGGATGTGAGAGAGGAGATGGGAAGCCTGTGAGACAGAGGCTTTTGGTGGTAGCAAACAGGTTGCCAGTGTCAGCAATTAGGAAAGGTGAGGATTCATGGTCTTTGGAGATAAGTGCTGGTGGCCTCGTGAGCGCCCTTTTAGGTGTGAAGGAGTTTGAAGCAAGGTGGATAGGTTGGGCTGGTGTTAATGTTCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCATTGGCTGAAAAGATGTGCATCCCCGTATTTCTTGATGAAGAGATTGTTCATCAATACTATAATGGCTATTGCAACAACATCTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCCACCACGCGTAGTTTTCAGTCTCAGTTTGCAGCGTATGAGAAAGCAAATGAAATGTTTGCTGAAGTTGTGAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCTTAAAGAAATACAACAGCGAAATGAAAGTTGGATGGTTTCTCCACACTCCATTCCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATTCTGTTCTTGCAGCTGATTTGGTTGGCTTTCACACCTATGATTATGCAAGACATTTTGTTAGTGCTTGTACTCGCATCCTTGGACTTGAGGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTGACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCAGAACGATTTATACGTGCACTTGACCTTCCTCCAGTACAGGAGCACATGAAAGACTTACAAGAAAGATTTAAAGGAAGAAAGGTAATGTTAGGCGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAAATGCTTATTGGCGTGACAAAGTCGTTTTGCTTCAAATCGCTGTGCCAACAAGAACAGATGTTCCTGAGTATCAGAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATTAATGGCAGATTTGGATCATTGACTACTGTTCCTATACATCACCTGGATCGATCTCTTGACTTTTATGCACTATGTGCTGTGTATGCTGTTACTGATGTAGCACTAGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGAGAAAAAGAAAGGGGTTCTTATTCTTAGTGAATTCGCTGGTGCAGCACAGTCTCTTGGTGCTGGGGCAATTCTTGTCAACCCCTGGAACATTACCGAAGTTGCTGCTGCAATTGCCAGGGCTCTGAATATGCCATCTGCAGAAAGAGAGAAGAGGCATAAGCATAATTTTCTTCACGTAAAATCCCATACTGCTCAAGAATGGGCAGGAACTTTTGTAAGGTATGTGTATTATGATTTTCAGGAAAGATCCACATTACCTTATGAATCTTTGAATATTTGCAGCGAACTAAATGATACTGTTATTGAGGCACAACAAAGGACAAGACAAGTTCCACCCCGACTACCAACCAAGACTGCAATTGAACATTATCTGCAGTCAACTAATAGATTGCTCATTTTGGGGTTGAATGGAACTTTAACTGAACCGGTCGAGAAAACAGGTGATCAGATTAAGGAAATGGAACTTAAGGTGCATCCAGAATTGAGACAACCCTTGATGGCTCTTTGCAGTGATCCAAATACCACCGTAGTAGTGCTCAGTGGAAGTGGTAGAAAAGTCCTAGATGATAACTTCAAAGAATATGATATGTGGTTGGCAGCAGAGAATGGGATGTTTTTACACCCTCCAAAGGGCGAATGGATGACAACAATGCCAGAGCATCTTAATATGGAATGGGTTGACAGCGTGAAGCATGTTTTTGAGTACTTCACAGAAAGAACACCTCGGTCACACTTTGATTTTGAAGAAAGGGAAACTTCACTTGTATGGAATTACAAATACGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAACATCTCTGGACGGGTCCAATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGAAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGTGAGATAGTCCACAGTAAATCCATGACATCACCAATTGATTATGTTCTTTGCGTAGGACATTTTCTGGGGAAGGATGAAGATATTTATGCCTTTTTTGAGCCAGATCTTCCTTCTGTTGGTGTGGGTTTTCCGCGAAGTAAGGTAACAACAGATGCAGTTAAGTATCCTGTTGAGAGGAGACCGTCTCCGAAGATCCCAGCTTGTGGTAAAAATGGACCAAAGTCATCTCAAAATAAGGCACCGAAGCCAGTGTCAAATTCTGAGAAGAAAACAAATAATCATGTCTGCAGTGCACCACGACGCCCTGCTCCTGAGAAGATATCATGGAACGTCCTTGACCTTAAGAAAAAGAATTACTTCTCATGTGCTGTTGGGAGAACTCGAACAAATGCACGGTATACACTTGGGTCATCAGATGATGTTGTTACATTTCTCAAGGAACTTGCGGATGCATAA 2835 0.43 MPGNKYNGDSNNHIPDRVERLLRDRELRKNTRAILNESSDNSISNNSNNEGLEQEQRLKEEEKLGEVEGVGGGRGGEGCERGDGKPVRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKMCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYEKANEMFAEVVNKHYEEGDVVWCHDYHLMFLPKCLKKYNSEMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPPVQEHMKDLQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTTVPIHHLDRSLDFYALCAVYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIARALNMPSAEREKRHKHNFLHVKSHTAQEWAGTFVRYVYYDFQERSTLPYESLNICSELNDTVIEAQQRTRQVPPRLPTKTAIEHYLQSTNRLLILGLNGTLTEPVEKTGDQIKEMELKVHPELRQPLMALCSDPNTTVVVLSGSGRKVLDDNFKEYDMWLAAENGMFLHPPKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFDFEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCVGHFLGKDEDIYAFFEPDLPSVGVGFPRSKVTTDAVKYPVERRPSPKIPACGKNGPKSSQNKAPKPVSNSEKKTNNHVCSAPRRPAPEKISWNVLDLKKKNYFSCAVGRTRTNARYTLGSSDDVVTFLKELADA. 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08113 944 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 698 780 - -
Seca4g08113 944 Pfam Trehalose-phosphatase 631 831 IPR003337 GO:0003824|GO:0005992
Seca4g08113 944 MobiDBLite consensus disorder prediction 34 58 - -
Seca4g08113 944 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 337 539 - -
Seca4g08113 944 MobiDBLite consensus disorder prediction 852 894 - -
Seca4g08113 944 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 90 552 IPR012766 GO:0003825|GO:0005992
Seca4g08113 944 SUPERFAMILY HAD-like 608 942 IPR036412 -
Seca4g08113 944 Gene3D - 698 780 - -
Seca4g08113 944 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 89 552 - -
Seca4g08113 944 MobiDBLite consensus disorder prediction 34 52 - -
Seca4g08113 944 FunFam Alpha,alpha-trehalose-phosphate synthase 632 703 - -
Seca4g08113 944 Gene3D Glycogen Phosphorylase B; 337 540 - -
Seca4g08113 944 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 82 336 - -
Seca4g08113 944 Gene3D - 631 824 IPR023214 -
Seca4g08113 944 Gene3D Glycogen Phosphorylase B; 83 336 - -
Seca4g08113 944 MobiDBLite consensus disorder prediction 864 886 - -
Seca4g08113 944 CDD GT20_TPS 90 552 IPR001830 GO:0003824|GO:0005992
Seca4g08113 944 Pfam Glycosyltransferase family 20 90 554 IPR001830 GO:0003824|GO:0005992
Seca4g08113 944 MobiDBLite consensus disorder prediction 64 83 - -
Seca4g08113 944 CDD HAD_TPP 609 835 - -
Seca4g08113 944 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 85 943 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08113 Seca-Chr4 191041727 191060679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08113 1 943 Trehalose Biosynthesis Gene Families AT1G78580 74.922 0.0 1438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08113 K16055 - gmx:100797320 1609.73