Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g08102 | ATGGACCTCAACGATCTTCCTCCTATCAAGAGGCTCAGACTCATTCAACAACAACAAAACAGTTCCAGTTCCAGTTCCAATCCTAGTCCCAGTCCCTGCTCACTCTTACCTACGAAGAAACGCAAGGAGTCTCGAAACTCCACGTTTCTTCGTAACCCACCACCATCACCTCCTAAACCCACCGTTTATTCTCTCCCCGCTAAGAAAAGAGTATGCGCACTCCATCCTCATTACCAAAACGACGCCGTTTCTTCCTTCGACCTAAACGAACCCCCAACCCCCGAAAAACCCCAACAACAAGAAGAAGAAAACGCAACTGCCACCGAAAACGACGACGACGGGATTGTATGCTGTGTGTGCCAGAGCACCGACGGTGACCCTGCGGATCCAATCGTTCTCTGCGATGGTTGCGACCTCATGGTGCACGCTTCCTGCTACGGCAACCCGCTCTGCAATGGCGTCCCTGAAGGCGACTGGTTCTGCGAACGGTGTCGTTTTGGCATCGGTGCTGATGTTGCGTGTTCGCTGTGTCCGGAGAAGAAGGGGGCAATGAAACGCACCACGGAGGAAGGTGCTTGGGCGCATCTAGCGTGTGCGCTGTTTGTGCCTGAGGTGTTTTTTTGGGATCCTGAAGGAAGGGAAGAGATTGATTGCTCTAAGGTTCCACAGAAGAGGTGGTTGCAGAAGTGCTATGTTTGTGAGTGCTGTGATGGTTGTGCTTTGGTTTGCTCTGAGCCAAAGTGTGGTTTGGCTTTTCATGTTACTTGTGCGCTCAAAGAGGATCTCTTCATCGAGTATAAGGAAGGGAAGAAAGGTGCTACCATTGTTGCTGGCTTCTGCAAAACCCACACAGAACTATGGGAAAAGCAACAGCTATCTGGGAAGTACAAAATTGTGGCCGTTGAAGATAAGAAGCAGCAAAAATGA | 927 | 0.5038 | MDLNDLPPIKRLRLIQQQQNSSSSSSNPSPSPCSLLPTKKRKESRNSTFLRNPPPSPPKPTVYSLPAKKRVCALHPHYQNDAVSSFDLNEPPTPEKPQQQEEENATATENDDDGIVCCVCQSTDGDPADPIVLCDGCDLMVHASCYGNPLCNGVPEGDWFCERCRFGIGADVACSLCPEKKGAMKRTTEEGAWAHLACALFVPEVFFWDPEGREEIDCSKVPQKRWLQKCYVCECCDGCALVCSEPKCGLAFHVTCALKEDLFIEYKEGKKGATIVAGFCKTHTELWEKQQLSGKYKIVAVEDKKQQK. | 309 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g08102 | 308 | SUPERFAMILY | FYVE/PHD zinc finger | 106 | 180 | IPR011011 | - | |
Seca4g08102 | 308 | CDD | PHD_BRPF_JADE_like | 116 | 164 | - | - | |
Seca4g08102 | 308 | MobiDBLite | consensus disorder prediction | 13 | 34 | - | - | |
Seca4g08102 | 308 | SMART | PHD_3 | 116 | 165 | IPR001965 | - | |
Seca4g08102 | 308 | SMART | PHD_3 | 229 | 284 | IPR001965 | - | |
Seca4g08102 | 308 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Seca4g08102 | 308 | ProSitePatterns | Zinc finger PHD-type signature. | 117 | 164 | IPR019786 | - | |
Seca4g08102 | 308 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 171 | 284 | IPR034732 | - | |
Seca4g08102 | 308 | MobiDBLite | consensus disorder prediction | 83 | 104 | - | - | |
Seca4g08102 | 308 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 168 | IPR013083 | - | |
Seca4g08102 | 308 | MobiDBLite | consensus disorder prediction | 83 | 109 | - | - | |
Seca4g08102 | 308 | Pfam | PHD-zinc-finger like domain | 173 | 283 | - | - | |
Seca4g08102 | 308 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 286 | IPR013083 | - | |
Seca4g08102 | 308 | PANTHER | PHD FINGER PROTEINS | 30 | 284 | - | - | |
Seca4g08102 | 308 | ProSiteProfiles | Zinc finger PHD-type profile. | 114 | 167 | IPR019787 | - | |
Seca4g08102 | 308 | Pfam | PHD-finger | 117 | 165 | IPR019787 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g08102 | Seca-Chr4 | 190754882 | 190756115 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g08102 | 36 | 306 | C2H2 Transcription Factor Family | AT3G14740 | 50.489 | 1.17e-93 | 280 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Seca4g08102 | zf-HC5HC2H_2 | 4.8e-25 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g08102 | K11380 | - | gmx:100802652 | 380.178 |