Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08102 ATGGACCTCAACGATCTTCCTCCTATCAAGAGGCTCAGACTCATTCAACAACAACAAAACAGTTCCAGTTCCAGTTCCAATCCTAGTCCCAGTCCCTGCTCACTCTTACCTACGAAGAAACGCAAGGAGTCTCGAAACTCCACGTTTCTTCGTAACCCACCACCATCACCTCCTAAACCCACCGTTTATTCTCTCCCCGCTAAGAAAAGAGTATGCGCACTCCATCCTCATTACCAAAACGACGCCGTTTCTTCCTTCGACCTAAACGAACCCCCAACCCCCGAAAAACCCCAACAACAAGAAGAAGAAAACGCAACTGCCACCGAAAACGACGACGACGGGATTGTATGCTGTGTGTGCCAGAGCACCGACGGTGACCCTGCGGATCCAATCGTTCTCTGCGATGGTTGCGACCTCATGGTGCACGCTTCCTGCTACGGCAACCCGCTCTGCAATGGCGTCCCTGAAGGCGACTGGTTCTGCGAACGGTGTCGTTTTGGCATCGGTGCTGATGTTGCGTGTTCGCTGTGTCCGGAGAAGAAGGGGGCAATGAAACGCACCACGGAGGAAGGTGCTTGGGCGCATCTAGCGTGTGCGCTGTTTGTGCCTGAGGTGTTTTTTTGGGATCCTGAAGGAAGGGAAGAGATTGATTGCTCTAAGGTTCCACAGAAGAGGTGGTTGCAGAAGTGCTATGTTTGTGAGTGCTGTGATGGTTGTGCTTTGGTTTGCTCTGAGCCAAAGTGTGGTTTGGCTTTTCATGTTACTTGTGCGCTCAAAGAGGATCTCTTCATCGAGTATAAGGAAGGGAAGAAAGGTGCTACCATTGTTGCTGGCTTCTGCAAAACCCACACAGAACTATGGGAAAAGCAACAGCTATCTGGGAAGTACAAAATTGTGGCCGTTGAAGATAAGAAGCAGCAAAAATGA 927 0.5038 MDLNDLPPIKRLRLIQQQQNSSSSSSNPSPSPCSLLPTKKRKESRNSTFLRNPPPSPPKPTVYSLPAKKRVCALHPHYQNDAVSSFDLNEPPTPEKPQQQEEENATATENDDDGIVCCVCQSTDGDPADPIVLCDGCDLMVHASCYGNPLCNGVPEGDWFCERCRFGIGADVACSLCPEKKGAMKRTTEEGAWAHLACALFVPEVFFWDPEGREEIDCSKVPQKRWLQKCYVCECCDGCALVCSEPKCGLAFHVTCALKEDLFIEYKEGKKGATIVAGFCKTHTELWEKQQLSGKYKIVAVEDKKQQK. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08102 308 SUPERFAMILY FYVE/PHD zinc finger 106 180 IPR011011 -
Seca4g08102 308 CDD PHD_BRPF_JADE_like 116 164 - -
Seca4g08102 308 MobiDBLite consensus disorder prediction 13 34 - -
Seca4g08102 308 SMART PHD_3 116 165 IPR001965 -
Seca4g08102 308 SMART PHD_3 229 284 IPR001965 -
Seca4g08102 308 MobiDBLite consensus disorder prediction 1 64 - -
Seca4g08102 308 ProSitePatterns Zinc finger PHD-type signature. 117 164 IPR019786 -
Seca4g08102 308 ProSiteProfiles Extended PHD (ePHD) domain profile. 171 284 IPR034732 -
Seca4g08102 308 MobiDBLite consensus disorder prediction 83 104 - -
Seca4g08102 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 168 IPR013083 -
Seca4g08102 308 MobiDBLite consensus disorder prediction 83 109 - -
Seca4g08102 308 Pfam PHD-zinc-finger like domain 173 283 - -
Seca4g08102 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 286 IPR013083 -
Seca4g08102 308 PANTHER PHD FINGER PROTEINS 30 284 - -
Seca4g08102 308 ProSiteProfiles Zinc finger PHD-type profile. 114 167 IPR019787 -
Seca4g08102 308 Pfam PHD-finger 117 165 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08102 Seca-Chr4 190754882 190756115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08102 36 306 C2H2 Transcription Factor Family AT3G14740 50.489 1.17e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g08102 zf-HC5HC2H_2 4.8e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08102 K11380 - gmx:100802652 380.178