Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08070 ATGACCATAGAAGCTAAGGCTGCCACCACTCCACAGTTGGCGCTGGCTGATACAGATATCAACTGGGACAGGTTGGATAAGACCAAGTTTCACGTTATTGGCGCCATACTCTTCACTGCTCAATCAACATTGCTTCATCCAACGGCGGTGGTGAAGACGAGGATGCAAGTAGCATGGTCTGGACTCTCTCACATGAAAGGAATGTCAGTGTTCACTCACATTTTGCGGAGTGATGGTATTCCTGGAATCTTTAGAGATTTCGGTACTTCTGCTACTGGATCAATGCCTGGCAGGGTGTTAGCTCTCACATCACTTGAAATGTCAAAGGACATTGTGTTAAAACACACTCAAGGTACGAGTCACTTTCCAGAAGCATCACGTGTTGCCCTTGCAAATGGAGTCGCTGGCATGGTTTCAAACCTGGTTTCTTGTGTATACTTATTCCCTTTGGATGTGATCTGCCAGAGGTTAATGGTACAAGGTCTTTCGGGAACTGTGTGTTGTAGAGGACTGTTTGATGTTATCTGTAGAATTGTGAAGGCTGAGGGTATTCGTGGCTTATATAGAGGTTTTGGATTAACAGCTGTGTCCCAGTCCCCAGCATCTGCACTTTGGTGGGGTTCATATGGTGCAGCACAACACATAATTTGGAGGAGTTTAGGCTACAAAGATGACACGGAGAATAAACCTTCACAAATGGAAATGATGACAGTTCAGGCTACTGTTGGGATGGTGGCTGGTGCTTGTTCCTCTGTTATCACTACCCCTATAGATACTGTAAAAACATGTCTTCAAGTTATGGACAACTTTGGTCCTGGAAGACCATCAGTACTGAAGACAGCAAAGACTCTCCTCAAGGAAGATGGGTGGTGGGAATTTTACAGGGGTTTTGGACCAAGATTTTTAAATATGTCACTTTATGGAACAACAATGATTGTTACTTATGAACTGATAAACAGAGTAAACCAAGTCTGA 975 0.44 MTIEAKAATTPQLALADTDINWDRLDKTKFHVIGAILFTAQSTLLHPTAVVKTRMQVAWSGLSHMKGMSVFTHILRSDGIPGIFRDFGTSATGSMPGRVLALTSLEMSKDIVLKHTQGTSHFPEASRVALANGVAGMVSNLVSCVYLFPLDVICQRLMVQGLSGTVCCRGLFDVICRIVKAEGIRGLYRGFGLTAVSQSPASALWWGSYGAAQHIIWRSLGYKDDTENKPSQMEMMTVQATVGMVAGACSSVITTPIDTVKTCLQVMDNFGPGRPSVLKTAKTLLKEDGWWEFYRGFGPRFLNMSLYGTTMIVTYELINRVNQV. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08070 324 SUPERFAMILY Mitochondrial carrier 23 317 IPR023395 -
Seca4g08070 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 111 IPR018108 -
Seca4g08070 324 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 11 321 - -
Seca4g08070 324 Gene3D Mitochondrial carrier domain 27 323 IPR023395 -
Seca4g08070 324 Pfam Mitochondrial carrier protein 130 217 IPR018108 -
Seca4g08070 324 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Seca4g08070 324 Pfam Mitochondrial carrier protein 238 321 IPR018108 -
Seca4g08070 324 PRINTS Mitochondrial carrier protein signature 142 160 IPR002067 GO:0055085
Seca4g08070 324 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085
Seca4g08070 324 PRINTS Mitochondrial carrier protein signature 243 265 IPR002067 GO:0055085
Seca4g08070 324 PRINTS Mitochondrial carrier protein signature 188 206 IPR002067 GO:0055085
Seca4g08070 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 321 IPR018108 -
Seca4g08070 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 215 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08070 Seca-Chr4 189654440 189657228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08070 17 321 Chloroplast and Mitochondria Gene Families AT5G15640 48.208 2.53e-100 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08070 K15121 - gmx:112997745 532.332