Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08068 ATGATTGCATCCAGGCAACCAAACTCCCAGCAGATTCAGCCAAACATGTTCACATCTGGGCAACCTAACTCCCAGCAGATTCAGCATAATGCACATGGTCAGCCTTTTGAAAACCAACAAGATTATAAAACAGCGTTTCCAAAAGTAGATGAACCGGAGTTTAAAAATGGAAGCCAAGTTGGACATTCACCATCCCAGTATCAACAAAGGAGTGCCTTGCCTGTTCAAAACAGCCAGAACATTCCTGCTGAAGTTAGTTCTGGTCAAGTGCCTAATGTAGGTGTTAATGCTTGCCAACCGCAACAATTCAGGGGCTTATCAGGCAGTATGCAACAATCTCCCTCTGCAATGCAGCCGCAGCAGGGTGGTTCTGAGTTATTTTACCAACATGTTCCTAACTTTCAAAACCAAATGAACCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTATCAGCCAAAAGATGGGATATGAGGACAATTCACGTGGCAGAGCTGGGAATGAATATTACTATAATTCTAACAAAGAGATGCCGACAATGGGTCGTCAACAGCCAGATATGACACAAATGCCCAACTCGAGAAATCAGCAGGATTTGAGGATTGGCAACGCTCCTTTCCAAAATGTAATGCCTAGTGGAAATGGAAGTGGCATTGCTGGGAATGCCATGTCTAACATGTTTACTCCTCCAATAGGAGGACCTCCATCTCTCTCAAGTAACTCTATGATGAGACCTCCTTATATTGGCTCATCAGATGTTACTGATCTCTCACCAGCTGAAATATACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTCATGACATTGCAAGTTGCAACTACTATCCTGATTTTTGGAGCCTGCAAAAGGGATGGTTGGAGCCTTTCTTGGGCATCTTCTATAAGTATATATTCTGCTGGCTTCTCGAACCCCACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATCGTGGCGATTGCCAAAACAGGCTCTGGGAAAACATTGGGCTACTTAATGCCTGCATTCATTCTTCTTAGACAGCTACGTAATAATCCTCTGAATGGCCCAACTGTCTTGGTTTTGGCTCAAACACGTGAACTTGCAACACAGATCCAAGAGGAGGGTGAACGTGGTCCCAATGATCGGTACAATATGGATGGGCGTGGGCGTGGGCGTGGACATGGACAATTTGACAATAGAAGAGATGTTGGTTACAGAAGTAGAGGCAGAAGTTACAGCGGTAGCCCTGAAAGAGTTAGAACATGGGATTATAGCAGCAGGAGTCGCAGTAGAAGCCGCAGCAGGAGTAGAAGTAGGAGCTGGAGCAGGGGTCGTAGCCGAAGTCGCAGCTGGTCTCGTGGCCGTAGTCGCAGCTATAGCCGTAGTATTAGTCTGCGTCGGAGCCGCAGCAGTCGAAGTTATAGCCGCAGCCCAAACCGTAGCAGAAGCCGTAGCCGCAGCTATGATAGGCCTGATAGGTCAGATCAACAGATTTCTGATAAGAAGGATATTAGGGCACCTGAAGCAGGAGCTTCTGATACAAAAATGTTTCCTGTGTCTCCCAGCACCCAAGGGAATTCATCTCTGGGAACTGAACATGTGGAGCAGCAACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGTTGCAGTAGACCTTAGTCATCAACCAGCTTCTGATATTTGA 1728 0.4659 MIASRQPNSQQIQPNMFTSGQPNSQQIQHNAHGQPFENQQDYKTAFPKVDEPEFKNGSQVGHSPSQYQQRSALPVQNSQNIPAEVSSGQVPNVGVNACQPQQFRGLSGSMQQSPSAMQPQQGGSELFYQHVPNFQNQMNPGMMHGHPSNVHPISQKMGYEDNSRGRAGNEYYYNSNKEMPTMGRQQPDMTQMPNSRNQQDLRIGNAPFQNVMPSGNGSGIAGNAMSNMFTPPIGGPPSLSSNSMMRPPYIGSSDVTDLSPAEIYCQQHEVTATGDNIPPPFMTLQVATTILIFGACKRDGWSLSWASSISIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQLRNNPLNGPTVLVLAQTRELATQIQEEGERGPNDRYNMDGRGRGRGHGQFDNRRDVGYRSRGRSYSGSPERVRTWDYSSRSRSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISLRRSRSSRSYSRSPNRSRSRSRSYDRPDRSDQQISDKKDIRAPEAGASDTKMFPVSPSTQGNSSLGTEHVEQQPVVGSTGPDNPEVAVDLSHQPASDI. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08068 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 387 IPR027417 -
Seca4g08068 575 MobiDBLite consensus disorder prediction 529 556 - -
Seca4g08068 575 Pfam DEAD/DEAH box helicase 320 387 IPR011545 GO:0003676|GO:0005524
Seca4g08068 575 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 327 387 IPR014001 -
Seca4g08068 575 MobiDBLite consensus disorder prediction 384 420 - -
Seca4g08068 575 MobiDBLite consensus disorder prediction 468 494 - -
Seca4g08068 575 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 275 387 - -
Seca4g08068 575 MobiDBLite consensus disorder prediction 58 72 - -
Seca4g08068 575 MobiDBLite consensus disorder prediction 1 41 - -
Seca4g08068 575 Gene3D - 258 397 IPR027417 -
Seca4g08068 575 MobiDBLite consensus disorder prediction 384 575 - -
Seca4g08068 575 MobiDBLite consensus disorder prediction 495 522 - -
Seca4g08068 575 MobiDBLite consensus disorder prediction 444 467 - -
Seca4g08068 575 SMART ultradead3 315 550 IPR014001 -
Seca4g08068 575 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08068 Seca-Chr4 189622951 189626233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08068 310 390 Eukaryotic Initiation Factors Gene Family AT5G11200 37.037 4.94e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08068 K12823 - gmx:100807830 560.451