Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g08068 | ATGATTGCATCCAGGCAACCAAACTCCCAGCAGATTCAGCCAAACATGTTCACATCTGGGCAACCTAACTCCCAGCAGATTCAGCATAATGCACATGGTCAGCCTTTTGAAAACCAACAAGATTATAAAACAGCGTTTCCAAAAGTAGATGAACCGGAGTTTAAAAATGGAAGCCAAGTTGGACATTCACCATCCCAGTATCAACAAAGGAGTGCCTTGCCTGTTCAAAACAGCCAGAACATTCCTGCTGAAGTTAGTTCTGGTCAAGTGCCTAATGTAGGTGTTAATGCTTGCCAACCGCAACAATTCAGGGGCTTATCAGGCAGTATGCAACAATCTCCCTCTGCAATGCAGCCGCAGCAGGGTGGTTCTGAGTTATTTTACCAACATGTTCCTAACTTTCAAAACCAAATGAACCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTATCAGCCAAAAGATGGGATATGAGGACAATTCACGTGGCAGAGCTGGGAATGAATATTACTATAATTCTAACAAAGAGATGCCGACAATGGGTCGTCAACAGCCAGATATGACACAAATGCCCAACTCGAGAAATCAGCAGGATTTGAGGATTGGCAACGCTCCTTTCCAAAATGTAATGCCTAGTGGAAATGGAAGTGGCATTGCTGGGAATGCCATGTCTAACATGTTTACTCCTCCAATAGGAGGACCTCCATCTCTCTCAAGTAACTCTATGATGAGACCTCCTTATATTGGCTCATCAGATGTTACTGATCTCTCACCAGCTGAAATATACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTCATGACATTGCAAGTTGCAACTACTATCCTGATTTTTGGAGCCTGCAAAAGGGATGGTTGGAGCCTTTCTTGGGCATCTTCTATAAGTATATATTCTGCTGGCTTCTCGAACCCCACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATCGTGGCGATTGCCAAAACAGGCTCTGGGAAAACATTGGGCTACTTAATGCCTGCATTCATTCTTCTTAGACAGCTACGTAATAATCCTCTGAATGGCCCAACTGTCTTGGTTTTGGCTCAAACACGTGAACTTGCAACACAGATCCAAGAGGAGGGTGAACGTGGTCCCAATGATCGGTACAATATGGATGGGCGTGGGCGTGGGCGTGGACATGGACAATTTGACAATAGAAGAGATGTTGGTTACAGAAGTAGAGGCAGAAGTTACAGCGGTAGCCCTGAAAGAGTTAGAACATGGGATTATAGCAGCAGGAGTCGCAGTAGAAGCCGCAGCAGGAGTAGAAGTAGGAGCTGGAGCAGGGGTCGTAGCCGAAGTCGCAGCTGGTCTCGTGGCCGTAGTCGCAGCTATAGCCGTAGTATTAGTCTGCGTCGGAGCCGCAGCAGTCGAAGTTATAGCCGCAGCCCAAACCGTAGCAGAAGCCGTAGCCGCAGCTATGATAGGCCTGATAGGTCAGATCAACAGATTTCTGATAAGAAGGATATTAGGGCACCTGAAGCAGGAGCTTCTGATACAAAAATGTTTCCTGTGTCTCCCAGCACCCAAGGGAATTCATCTCTGGGAACTGAACATGTGGAGCAGCAACCTGTTGTTGGGAGTACTGGCCCAGATAATCCAGAGGTTGCAGTAGACCTTAGTCATCAACCAGCTTCTGATATTTGA | 1728 | 0.4659 | MIASRQPNSQQIQPNMFTSGQPNSQQIQHNAHGQPFENQQDYKTAFPKVDEPEFKNGSQVGHSPSQYQQRSALPVQNSQNIPAEVSSGQVPNVGVNACQPQQFRGLSGSMQQSPSAMQPQQGGSELFYQHVPNFQNQMNPGMMHGHPSNVHPISQKMGYEDNSRGRAGNEYYYNSNKEMPTMGRQQPDMTQMPNSRNQQDLRIGNAPFQNVMPSGNGSGIAGNAMSNMFTPPIGGPPSLSSNSMMRPPYIGSSDVTDLSPAEIYCQQHEVTATGDNIPPPFMTLQVATTILIFGACKRDGWSLSWASSISIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQLRNNPLNGPTVLVLAQTRELATQIQEEGERGPNDRYNMDGRGRGRGHGQFDNRRDVGYRSRGRSYSGSPERVRTWDYSSRSRSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISLRRSRSSRSYSRSPNRSRSRSRSYDRPDRSDQQISDKKDIRAPEAGASDTKMFPVSPSTQGNSSLGTEHVEQQPVVGSTGPDNPEVAVDLSHQPASDI. | 576 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g08068 | 575 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 310 | 387 | IPR027417 | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 529 | 556 | - | - | |
Seca4g08068 | 575 | Pfam | DEAD/DEAH box helicase | 320 | 387 | IPR011545 | GO:0003676|GO:0005524 | |
Seca4g08068 | 575 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 327 | 387 | IPR014001 | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 384 | 420 | - | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 468 | 494 | - | - | |
Seca4g08068 | 575 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 275 | 387 | - | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 58 | 72 | - | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Seca4g08068 | 575 | Gene3D | - | 258 | 397 | IPR027417 | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 384 | 575 | - | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 495 | 522 | - | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 444 | 467 | - | - | |
Seca4g08068 | 575 | SMART | ultradead3 | 315 | 550 | IPR014001 | - | |
Seca4g08068 | 575 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g08068 | Seca-Chr4 | 189622951 | 189626233 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g08068 | 310 | 390 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 37.037 | 4.94e-08 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g08068 | K12823 | - | gmx:100807830 | 560.451 |