Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08057 ATGATCATATTGGAATTGCTCATGGATTGGCTTAATTATCTTCATTATGACTGTGATCCTGTCATAGTGCACCGAGACATCAAAACAAGCAACATACTTCTAGAGTCTGAAATGGAGCCTAATATTTCAGATTGTGGTGATGCTACTTTTGGATCAGGCTTCTACCTCAACACAATCAATATTTGTTATTGGTATAATTGGTTATATTGCACCAAAGAATGCTTATACAAGAGCAAAGGTTAA 243 0.3539 MIILELLMDWLNYLHYDCDPVIVHRDIKTSNILLESEMEPNISDCGDATFGSGFYLNTINICYWYNWLYCTKECLYKSKG. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08057 80 ProSiteProfiles Protein kinase domain profile. 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08057 80 SUPERFAMILY Protein kinase-like (PK-like) 11 76 IPR011009 -
Seca4g08057 80 PANTHER LEUCINE RICH REPEAT KINASE 2 7 50 - -
Seca4g08057 80 Gene3D Transferase(Phosphotransferase) domain 1 1 78 - -
Seca4g08057 80 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08057 Seca-Chr4 189212680 189213069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08057 11 48 Receptor kinase-like Gene Family AT1G73080 65.789 1.95e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Seca4g08057 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08057 - - gmx:100802056 70.0922