Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08052 ATGCAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGACTGGACAACTTCTTGTTGTAGCATCTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGAAGATGCACACGTTACAGGGACACTCTGTAGAGGTACACTGTGTATGTTGGGATACAAATGGAGAGTACTTGGCATCTGTAAGTCAAGAATCTGTCAAAGTATGGTCACTTACCTCTAGGGACTGCATTCATGAACTTAACTCCAGTGGAAATATGTTTCATTCTTGTGTTTTTCATCCAAGCTACTCCACTCTATCGGTTATTGGTGGATACTGGGTATGTTTGTACATATGA 339 0.4307 MQGGSTQVRFQPRTGQLLVVASGSVVSLFDVETDRKMHTLQGHSVEVHCVCWDTNGEYLASVSQESVKVWSLTSRDCIHELNSSGNMFHSCVFHPSYSTLSVIGGYWVCLYI. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08052 112 Gene3D - 1 107 IPR015943 GO:0005515
Seca4g08052 112 SMART WD40_4 33 71 IPR001680 GO:0005515
Seca4g08052 112 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 2 106 IPR044716 GO:0003714
Seca4g08052 112 ProSiteProfiles Trp-Asp (WD) repeats profile. 40 80 IPR001680 GO:0005515
Seca4g08052 112 Pfam Coatomer WD associated region 15 102 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Seca4g08052 112 SUPERFAMILY WD40 repeat-like 6 102 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08052 Seca-Chr4 189008442 189008891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08052 6 102 U-box Gene Family AT2G33340 30.612 2.91e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08052 - - gmx:100797756 194.512