Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08051 ATGCCTTCCTTAAGTTGCTCGTCCAGAAACGAGGAATCTGAATCGAGATCTAATCCCAATCCAAAGTGGATCTACGATGTGTACTTGAGCTTCTGTGCCAAAGACACAGCCTCTTTTGCTTCACATCTCTATACCACTCTTAGTAAAAATTCTGGAGTTTCTGTTTTCTGGGACGACTATGACAGGCTTGGAAGTGGAGATCAGATAACACCCTCGGTGCATCTTGCAATCGGAGGGTCTAGAATTTCCATCATCGTTTTCTCAAGAAATTATGCTAATTCGAGATGGTGTCTTCAAGAGTTGGAGAAAATAATGGAGTGTCGCAGAACCATAGGTCAGATGGTTCTTCCTCTGTTCTGTGATGTACATCCTTCCGATGTACGTGGGCAGAGAGGTGTGTTTGGTGAGGCTTTTAAAGATCTTGTACAAAGAATCTTTTTGGAGGAAACCTGGGAGGAGGAAGACAAGTTCATAAGTTGGGTGGCAGCGCTCAGTGAAGCTAGCAAAATTTCAGGACATGTCTTCATGGGTTCCAGATTTGTCGGCATCCTGCGTTTGAGTCGGAAGAAATTGTCAGAATTATCTGATATCAGAAAACGTGGAAGCCACTTATGTGATTATTCTTTTAAGAAATTTGCAAGTATTATATTACTCGTTGAAGACTTTTCCAAAACACTATTACGAAACCTCCATTCTGCAACTGCAACGAAGAAATTCTTTGTCGCTGTTGAGGAGATTCTCTGCAACTGCGAATCCTACATTCTGGAACGCAAGTCTGCCGTTGCCGCCCGCATTGAGGAGAAGAAGGAAGCCGGTCTTGTTGGGCTCCGAAGTTCCATCTCCGAAATTCTGCTCGCTGCCGTTGTTGCGGTTCATCGCTTCCAGGAAGCGCCGAAATTCTGCTCCGGAATTCTGACTGTAAGGAACGAAAATGAAGATATTAAGAATATAGTTGAACATGTGACTCATGTGCTAGACAAGAGAGACTTATTCGTTGCTAACCATCCAGTGGGAGTAGAATCTCGTGTGCAAGATGTGGTTCAACTATTGAACAACCAACAATCAAAATATCCTCTACTATTAGGGATTTGGGGTATGGCAGGGATTGGTAAAACAACCATTGCCAAAGCCATTTATAATCAAATTGGTCGCCATTTTGAGGACAAGAGCTTCCTCCTTAATATCCGGGAAGTTTGGAAACAAAATAATGGCCAAGTTTCTTTACAAGAGAGGCTTCTTTTTGATATCTACAAAACAATGAAAATAAAGTTACATACAACTGAAGCAGGAAAAATGATATTAAAAGAAAGGCTTCATCACAAAAGAATACTTCTTATACTTGACAATGTGAATAACTTGGAGCAGCTAAATGCATTATGTGGAAGTCGTGAATGGTTTGGTTTAGGTAGCAAAATAATCATAACGACAAGAGATAAACATCTACTTAGGATGATTGGAGTTGATCATGTATATAAAGTGGTAGAACTAGAGCAAAGTGAATCTCTTGAGCTTTTTAGTTGGCATGCGTTCAAGCAAGGATGTCCTAAAGAAGACTTTGTTGAACTTTCTCAAGAATTAGTTGCTTATTCTGGTGGATTACCATTTGCTCTAGAAGTCCTTGGGTCCATTTTGTTTGAAAAGGTAACATCAGAGTGGGAGAGTATGTTGCAGAAACTCAAAAGAATTCCCAATAGGGAAATACAAAATGTTCTAAAAGTGAGTTTTGATGATTTAAATGATAAAGAGAAAAAAATATTCCTTGATATAGCATGTTTCTTTATTGGGATGGACCGGGATAATGTGATACATACATTAAATAGGTCAATACAATTCGCAGCACTTCAAGTAAGTTTCCTTGAAGACAAAAGCCTTGTAACCATTGGTGAGAATAACAAACTTGGAATGCACGTTCTATTGAGAGACATGGCAAGGGAAATTATTATGAAGGAATCACGAATTAAACCTGAGCCAAGGATCTATGATGTATTCTTGAGTTTCAGAGGGGAAGACACCCGTGCATCATTCACTTCACATCTTTATGTCGCTCTACAAAATGAAGGTATATATGTTTTCAGGGATAATGATGAGATTCAAAGGGGAGAGCAGATCTCAGTCTCACTATTGCAAGCAATCAGAAGGTCTAGAATATGTGTCATTGTTTTATCAAGAAACTATGCTAATTCAAGATGGTGTATGCAAGAGTTGGAGAACATAATGGAAAGTCGTAGAGCCACAGGTCTGGTGGTTGTGCCAGTGTTCTATGGAGTTGATCCCTCAGATGTACGTCATCAAACAGGTAAATTTGGAGAAGCTTTTGAAGATCTTATTACAAGTGTCTCAATGGATGAATATAGGGTGAGGAATTGGAGGTTAGTGCTCCTTGAAGTTGGTGGCATAGCAGGCTTTGTCTTCATAGATTCCAGGAATGAAAGTGCGGATATCAAGAATATTGTTGAACATGTTACCCGTTTGTTAGATAGGACAGAACTATTCGTTGCTGAACATCCAGTGGGAGTAGAATCTCGCGTGCAAGTTGTGACTAAACTATTAAACATGCAACAATCAAAAGATGTTTTACTTGTAGGGATTTGGGGGATGGGAGGTATTGGTAAAACAACCATTGCCAAAGCCATCTATAATCAAATTGGGAGCAATTTTGAGGGTAGGAGTTTCCTCCCAAATATCAGGGAAGTTTGGGATCAGAAAGATACTAACAGAGTTTCTTTACAACAACTTGTTCTTTATGATATTTTCAAAACAACAACATTGAAGATACAAAACATTGAATCAGGGAAAAATATATTAAAGGAAAGACTTTCCCATAAAAAGGTACTTGTTGTGCTTGATGATGTGAATGAATTAGACCAACTAAATGCTTTGTGTGGAAGCCGTGAATGGTTTGGTCCAGGGAGTAGAATAATCATCACAACAAGAGATAAGCGTCTTCTTAGATTGCGTAGAGTTGACCATGTATATAGAATGGAAGAAATGAACGAGAGTGAATCTCTTGAGCTTTTTAGTTGGCACGCATTTAAGGAAGCAAGTCCAAGAGAAGATTTTGCTACACATTCAACAAACGTGGTTGCTTATTCTGGAAGATTGCCACTAGCACTTGAAGTCCTTGGGTCATGTTTGTTTGACAGGGGAATAACAGAGTGGGAGAGTGTGTTGGAGAAACTCAAAAGAATTCCAAACGATCAAGTACAGAAGAAGCTGAAAATAAGCTACGATGGTTTAAGTGATGATACTCAGAAGGAAATATTTCTTGACATTGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTTATACATATATTAAATGGTTGTGGACTTTACCCCGAAATTGGAATTAGTGTCCTTGTAGAGCGAAGCCTTGTAACTGTTGACAATAAAAACAAGCTTGGAATGCATGATTTGTTGAGAGACATGGGAAGAGAAATAATTCGTGAGAAATCACCTAATGAGCCTGAGGAGCGTAGTAGGTTATGGCTTCGAGAGGATGTGCTTGATGTATTGTCAAAGCATAAGGGGACAAAAGCTGTCAAGGGATTGAGTTTGAGATTGACTGGAAAAAATACAATTTGTTTGAATACCAAAGCATTTGATAAGTTGAATAGACTCAGATTACTTCAACTTGCTGGTGTGAGACTTAACGGAGATTTTAAGCATCTTGCAGGAGATCTTAGATGGTTGTGCTGGCGTGGTTTTCCGTTAACTTACGCACCTGCAGAAATATTTCAGCAAGGAAATTTAGTTGCTATTGAATTAAAATATAGCAATCTCAAACAAATGTGGAAGAAGAGCCAGATGCTAGAGAATCTGAAAGTTCTTAATCTTAGTCATTCCAAGGATTTGACTAAAACCCCAGACTTTTCATACTTGCCTAATCTTGAAAAGCTAGTACTGAAAGATTGTCCAAGTTTGACTGTGGTCTCCCATACCATTGGATATCTCCATAAACTAGTTCTGATAAATCTGAAAGACTGCACAGGTCTTGGGAACCTTCCTAGAAGCATCTATAAATTGAAATCTCTAGAAACTCTGATTCTTTCAGGATGTTCAATGATTGACAAGTTGGAGGAGGATTTGGAACAGATGGAATGTTTGACAACCTTGATTGCAGATAACACTGCTATAACAAAAGTGCCCTTTTCAATAGTAAGATCAAAAAGCATTGGCTATATTTCTTTATGTGGCTTTGAAGGATTTTCTCGTCATGCATTTCCTCATCTCATTTGGTCTTGGATGTCACCAACAAACAATCTCTCATCCCTAGATGTGGGCAATATTTCATCTCTTGTTACAACATTCGATGTCCCAAACACTAATTCCTATACTCTTTCATATACTCTCAAAGACCTTCCAAAGCTTCGAAGTCTTTATGTGAGGTGTGCCTCAGAACTTCAACTAAGTCGAGATGTAGCTAGAATTTTGGATATCTTAAAGGCCACAAATTGGAATACTACTTCTCCCTCAATTGATTGCTGCAGTCAAACTATCGATGGGCCAGGTGGAGATTATTTTTCAATCCCCGGTGATAAGTATTCTGATTGGTTCACCTTCAATTGCAATGGTTCATCCATAACATTTGATGTCCCACAAATGAATGGGCGTAACCTGAAGAGAATGATGTTGCGCATTATCTTTCACTCCTCCTCAGATAATATAACATCACAAGGTTGTCAAAATGTTTTGATCATAAATTACACAAAGACAATCATTCAAGTGTATAAAAGAGATACACTAACCTCTTTTGAGAATGAGGAGTGGCAGAGCATAACATCAAATTTTGAACCTGGTAACAGAGTGGAGGTTATTGTTGTTTGTGGGCAGGGATTCATTGTAGAGAAGACAGCAATATATCTCCTATATGATGAATCAATTAACGAAGAAATAATGGAGCACTGCCATACAACAGATAAGGATGTTATTGTTTATGGTGATGATGATCATATGGCAGCAAATCGGAATGTTACTGTTTCTCGTAGAGATGAAAATGTAAGTGATATAAGTCTAAATTTAAGCCCTTTTTAA 5037 0.3855 MPSLSCSSRNEESESRSNPNPKWIYDVYLSFCAKDTASFASHLYTTLSKNSGVSVFWDDYDRLGSGDQITPSVHLAIGGSRISIIVFSRNYANSRWCLQELEKIMECRRTIGQMVLPLFCDVHPSDVRGQRGVFGEAFKDLVQRIFLEETWEEEDKFISWVAALSEASKISGHVFMGSRFVGILRLSRKKLSELSDIRKRGSHLCDYSFKKFASIILLVEDFSKTLLRNLHSATATKKFFVAVEEILCNCESYILERKSAVAARIEEKKEAGLVGLRSSISEILLAAVVAVHRFQEAPKFCSGILTVRNENEDIKNIVEHVTHVLDKRDLFVANHPVGVESRVQDVVQLLNNQQSKYPLLLGIWGMAGIGKTTIAKAIYNQIGRHFEDKSFLLNIREVWKQNNGQVSLQERLLFDIYKTMKIKLHTTEAGKMILKERLHHKRILLILDNVNNLEQLNALCGSREWFGLGSKIIITTRDKHLLRMIGVDHVYKVVELEQSESLELFSWHAFKQGCPKEDFVELSQELVAYSGGLPFALEVLGSILFEKVTSEWESMLQKLKRIPNREIQNVLKVSFDDLNDKEKKIFLDIACFFIGMDRDNVIHTLNRSIQFAALQVSFLEDKSLVTIGENNKLGMHVLLRDMAREIIMKESRIKPEPRIYDVFLSFRGEDTRASFTSHLYVALQNEGIYVFRDNDEIQRGEQISVSLLQAIRRSRICVIVLSRNYANSRWCMQELENIMESRRATGLVVVPVFYGVDPSDVRHQTGKFGEAFEDLITSVSMDEYRVRNWRLVLLEVGGIAGFVFIDSRNESADIKNIVEHVTRLLDRTELFVAEHPVGVESRVQVVTKLLNMQQSKDVLLVGIWGMGGIGKTTIAKAIYNQIGSNFEGRSFLPNIREVWDQKDTNRVSLQQLVLYDIFKTTTLKIQNIESGKNILKERLSHKKVLVVLDDVNELDQLNALCGSREWFGPGSRIIITTRDKRLLRLRRVDHVYRMEEMNESESLELFSWHAFKEASPREDFATHSTNVVAYSGRLPLALEVLGSCLFDRGITEWESVLEKLKRIPNDQVQKKLKISYDGLSDDTQKEIFLDIACFFIGMDRNDVIHILNGCGLYPEIGISVLVERSLVTVDNKNKLGMHDLLRDMGREIIREKSPNEPEERSRLWLREDVLDVLSKHKGTKAVKGLSLRLTGKNTICLNTKAFDKLNRLRLLQLAGVRLNGDFKHLAGDLRWLCWRGFPLTYAPAEIFQQGNLVAIELKYSNLKQMWKKSQMLENLKVLNLSHSKDLTKTPDFSYLPNLEKLVLKDCPSLTVVSHTIGYLHKLVLINLKDCTGLGNLPRSIYKLKSLETLILSGCSMIDKLEEDLEQMECLTTLIADNTAITKVPFSIVRSKSIGYISLCGFEGFSRHAFPHLIWSWMSPTNNLSSLDVGNISSLVTTFDVPNTNSYTLSYTLKDLPKLRSLYVRCASELQLSRDVARILDILKATNWNTTSPSIDCCSQTIDGPGGDYFSIPGDKYSDWFTFNCNGSSITFDVPQMNGRNLKRMMLRIIFHSSSDNITSQGCQNVLIINYTKTIIQVYKRDTLTSFENEEWQSITSNFEPGNRVEVIVVCGQGFIVEKTAIYLLYDESINEEIMEHCHTTDKDVIVYGDDDHMAANRNVTVSRRDENVSDISLNLSPF. 1679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08051 1678 ProSiteProfiles TIR domain profile. 658 796 IPR000157 GO:0007165
Seca4g08051 1678 SUPERFAMILY Toll/Interleukin receptor TIR domain 652 802 IPR035897 -
Seca4g08051 1678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 1091 IPR027417 -
Seca4g08051 1678 Gene3D - 823 990 IPR027417 -
Seca4g08051 1678 Gene3D - 317 490 IPR027417 -
Seca4g08051 1678 Gene3D Ribonuclease Inhibitor 1169 1490 IPR032675 -
Seca4g08051 1678 Pfam TIR domain 25 166 IPR000157 GO:0007165
Seca4g08051 1678 Pfam TIR domain 660 824 IPR000157 GO:0007165
Seca4g08051 1678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 589 IPR027417 -
Seca4g08051 1678 Gene3D - 658 822 IPR035897 -
Seca4g08051 1678 Gene3D - 20 195 IPR035897 -
Seca4g08051 1678 FunFam Disease resistance protein (TIR-NBS-LRR class) 656 827 - -
Seca4g08051 1678 Gene3D - 996 1080 IPR042197 -
Seca4g08051 1678 Gene3D - 495 579 IPR042197 -
Seca4g08051 1678 SUPERFAMILY L domain-like 1137 1464 - -
Seca4g08051 1678 SMART till_3 659 799 IPR000157 GO:0007165
Seca4g08051 1678 SMART till_3 24 170 IPR000157 GO:0007165
Seca4g08051 1678 SUPERFAMILY "Winged helix" DNA-binding domain 566 653 IPR036390 -
Seca4g08051 1678 PRINTS Disease resistance protein signature 1031 1045 - -
Seca4g08051 1678 PRINTS Disease resistance protein signature 1270 1286 - -
Seca4g08051 1678 PRINTS Disease resistance protein signature 938 952 - -
Seca4g08051 1678 PRINTS Disease resistance protein signature 860 875 - -
Seca4g08051 1678 Pfam NB-ARC domain 340 565 IPR002182 GO:0043531
Seca4g08051 1678 Pfam NB-ARC domain 843 1076 IPR002182 GO:0043531
Seca4g08051 1678 ProSiteProfiles TIR domain profile. 23 168 IPR000157 GO:0007165
Seca4g08051 1678 SMART AAA_5 857 998 IPR003593 GO:0016887
Seca4g08051 1678 SMART AAA_5 357 500 IPR003593 GO:0016887
Seca4g08051 1678 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 172 IPR035897 -
Seca4g08051 1678 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 660 1472 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08051 Seca-Chr4 188977162 189002577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08051 289 658 WRKY Transcription Factor Family AT4G12020 32.615 1.33e-42 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08051 - - aprc:113850911 1772.67