Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08050 ATGGGTTTTTGGATGTTGCACCGAAGAAGAAATAATTATAACCAAGGGGGAAGAAGATCTAATGGAAGAGTACTTAAGGCTCAGAGAGAAGATATCATTAGAAGAACAGTATATGTTTCTGATATTGATCAGCAAGTAACTGAGGAGCGGCTTGCTGCCTTATTCAGCTCTTGTGGTCCAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCATTTGTGGAGTTCGCAGATGATTACAGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTACTTGGATTCTATCCTGTCAGGGTCCTTCCTTCTAAAACTGCTATCCTTCCTGTGAATCCAACATTCCTTCCTAGGTCAGATGATGAGAGGGAAATGTGTTCCAGGACTGTCTACTGCACAAATATTGATAAAAAGATTTCTCAGGCTGAAGTCAAGAAATTTTTTGAAATATCTTGTGGTGAGGTTACTCGTTTAAGGCTTTTAGGAGATAATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTATTGCGCTTAGTTGTAGTGGGATGCTCTTGGGAACCCAGCCTGTCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGGTCCCTCGTGCAACAATAGCACATTAG 666 0.4219 MGFWMLHRRRNNYNQGGRRSNGRVLKAQREDIIRRTVYVSDIDQQVTEERLAALFSSCGPVIDCRICGDPHSVLRFAFVEFADDYSARAALNLGGTVLGFYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKISQAEVKKFFEISCGEVTRLRLLGDNVHSTRIAFVEFAMAESAIIALSCSGMLLGTQPVRVSPSKTPVRPRVPRATIAH. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08050 221 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 15 213 - -
Seca4g08050 221 SUPERFAMILY RNA-binding domain, RBD 122 213 IPR035979 GO:0003676
Seca4g08050 221 FunFam Polyadenylate-binding protein-interacting protein 11 4 112 - -
Seca4g08050 221 CDD RRM2_CID8_like 128 209 IPR034825 -
Seca4g08050 221 CDD RRM1_CID8_like 33 112 IPR034823 -
Seca4g08050 221 FunFam Polyadenylate-binding protein-interacting protein 10 126 204 - -
Seca4g08050 221 SMART rrm1_1 133 204 IPR000504 GO:0003723
Seca4g08050 221 SMART rrm1_1 36 106 IPR000504 GO:0003723
Seca4g08050 221 SUPERFAMILY RNA-binding domain, RBD 17 111 IPR035979 GO:0003676
Seca4g08050 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 208 IPR000504 GO:0003723
Seca4g08050 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 110 IPR000504 GO:0003723
Seca4g08050 221 Gene3D - 120 213 IPR012677 -
Seca4g08050 221 Gene3D - 7 111 IPR012677 -
Seca4g08050 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 99 IPR000504 GO:0003723
Seca4g08050 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 199 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08050 Seca-Chr4 188961098 188972367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08050 34 189 Eukaryotic Initiation Factors Gene Family AT1G34140 27.673 7.75e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08050 - - lja:Lj3g3v0409470.1 384.415