Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08049 ATGCGGAACGGAAGAGCACCATGCTGCGATAAAAATCGAGTGAAGAAAGGCCTTTGGAGCCCTGCAGAAGACCTGAAGTTGATTACTTTCATCCAAAAACATGGTCATGATAATTGGCGTGCTCTCCCCAAACAAGCAGTCATAATTTTGATATTAGGGCTTATGCGATGTGGAAAAAGTTGTCGTTTGAGATGGATAAATTACCTTAGGCCTGATTTGAAGAGAGGGAATTTTACAGAAGAGGAAGAGGAAACTATAATAAGGCTACATGAGGCTTGGGGAAACAAGTGGTCAAAGATTGCTTCCAATTTGCCAGGTAGGACAGATAATGAGATCAAGAATGTATGGAACACCCACTTAAAGAAAAGATTGGCTAACAAAAGAAAATCAAGGTCTAGTGTAGATGAATCCAAGCTGAAATCATCTGTAGCATCCTCCTCTTCATCTTCACTTGAATCAAATTTCTCAAATGAGACATCAAATTCAGTTATGACTGCTATTGGTAATGAATCTGATACACAAGCTCCTGAAGTGACAATGATAGAGAAAGATGAGAAACGATCAATGAAACAAGTGTTAGATGAACTTAATGGGGTCTATGAGAACTCAAATGAGTCAGCAAATTCAGTATCTTGGAGTGAGTCAAACACCTTCAATTCAAGCCAGATTCTTGCTTATGAACCAGAACAACAAATGAGTTCTCCATCCAGCAATGTAGGAGCTTATGATGTTGACAATGTGCTGCAAGAGGTGGATGAACTCCAAATTCTTGAAATTCCATTGGATCCAAATTATGATATTGAGAAAATGTTGGATAACATAGGAACCAATCAGTCAGATGTGGTCCAATTACACCAAGTTGATGGTAACCAAACCTCAAATTTTGGGCAAGAGAGTGTTCAAGATATTGAAACTTGGAAGTGGTTACTTGACTCTGAGAGTGATACTGGATTAGGTGCACCAAAGGAGACAAACAACGATATGTTTCAACAAATGAATAATGCAACTGACTCAGGAATGGAGCCTTATTCATATGATTTTGATGCAATGCCAACACCTGAGTCTGATCTTGAACTAGGTTATGTTCAATGGGGGTCTTCTTGGCCTCACAATCCAAGTATTTAA 1125 0.3893 MRNGRAPCCDKNRVKKGLWSPAEDLKLITFIQKHGHDNWRALPKQAVIILILGLMRCGKSCRLRWINYLRPDLKRGNFTEEEEETIIRLHEAWGNKWSKIASNLPGRTDNEIKNVWNTHLKKRLANKRKSRSSVDESKLKSSVASSSSSSLESNFSNETSNSVMTAIGNESDTQAPEVTMIEKDEKRSMKQVLDELNGVYENSNESANSVSWSESNTFNSSQILAYEPEQQMSSPSSNVGAYDVDNVLQEVDELQILEIPLDPNYDIEKMLDNIGTNQSDVVQLHQVDGNQTSNFGQESVQDIETWKWLLDSESDTGLGAPKETNNDMFQQMNNATDSGMEPYSYDFDAMPTPESDLELGYVQWGSSWPHNPSI. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08049 374 FunFam Transcription factor RAX3 9 75 - -
Seca4g08049 374 CDD SANT 88 120 IPR001005 -
Seca4g08049 374 Pfam Myb-like DNA-binding domain 75 120 IPR001005 -
Seca4g08049 374 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Seca4g08049 374 SMART sant 74 122 IPR001005 -
Seca4g08049 374 SMART sant 15 71 IPR001005 -
Seca4g08049 374 Gene3D - 76 148 - -
Seca4g08049 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 69 IPR017930 -
Seca4g08049 374 SUPERFAMILY Homeodomain-like 13 116 IPR009057 -
Seca4g08049 374 CDD SANT 19 69 IPR001005 -
Seca4g08049 374 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Seca4g08049 374 MobiDBLite consensus disorder prediction 137 159 - -
Seca4g08049 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Seca4g08049 374 Gene3D - 16 74 - -
Seca4g08049 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 215 - -
Seca4g08049 374 ProSiteProfiles Myb-like domain profile. 11 69 IPR001005 -
Seca4g08049 374 MobiDBLite consensus disorder prediction 123 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08049 Seca-Chr4 188927205 188932966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08049 1 278 MYB Transcription Factor Family AT1G79180 45.603 5.05e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g08049 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08049 K09422 - gmx:100805511 367.081