Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08045 ATGGCGAGGACGAGGCTCAGAATGGAATGGGCAGAATCCGATTCAAGTTCCTCTGATTCTCTGATAATACGCATCTTAGAGTGCAGGTTCTTTCGTCGTGCTCGTAAGAAGGATGTAGTAACTTTTTCTTCAGGAAGTTTTACTTCTCGCAGAAACTTAAGAGGATTGGGCGAATTGGAGTTTCTTGAGGAGCTCGCCGAAGGCGGTTACGGCAGAGTTTTCCGCTGTCGTGATCTCAAAGAAGGCGGCATTGTCGCCGTTAAACAAATCGCAATTATCGGCGTACACGAAGGAATTCCTGGTTTCATCCTCAGAGAAGTCTCGCTTCTCAAAGAGCTGAACCATCCCAACATTGTCAGGTTGTTGAGAGTAATTTCCATGAACAACAAATACGTGAATCTCGTTTTTGAGCAGCTTGATTGTGATCTTCATCAGTACATTTATAATCGTCGTTACCCTAAGGATTCGATGACTAGAAAGAGTTTGCTGCATCAAATACTCTCAGCCGTGGCATACTGTCATGCTCATAAGATTCTCCACAGAGATTTGAAACCAAGGAATTTGCTGATTGATCTTTCTAAAATGACAGTCAAGCTGGCTGATTTCGGTTTGGCTAGAGAATTTGCAGATCCTGATACGTTATATACTGATAAAAGTCGATTTTCAGGTAAGTCGAGACTTGAACCGATTAATGTTTGCCCTTCTAGTTTGCAACTGAACCAACAAAGATTTTCTGTACTAAGAATGTTAGGTGCCCCGTCAGAGGACACGTGGCCAGGAGTCACTGAATTGTGTACTCACCTTCAAAGCTACGCCGAATTTAAACCAATGGACCTGTCAACAATTTTTGCCGATCTTGAACCAGCTGGCGTTAGTCTTCTATCGATGATGCTTTGCCTGGACCCAGTGAGAAGGATTTCTGCCGAAGCTGCTCTAAAGCATGCTTACTTTAACGATTTGGTATCTCTTCCTCTGCTGCTCTCTTAA 987 0.4347 MARTRLRMEWAESDSSSSDSLIIRILECRFFRRARKKDVVTFSSGSFTSRRNLRGLGELEFLEELAEGGYGRVFRCRDLKEGGIVAVKQIAIIGVHEGIPGFILREVSLLKELNHPNIVRLLRVISMNNKYVNLVFEQLDCDLHQYIYNRRYPKDSMTRKSLLHQILSAVAYCHAHKILHRDLKPRNLLIDLSKMTVKLADFGLAREFADPDTLYTDKSRFSGKSRLEPINVCPSSLQLNQQRFSVLRMLGAPSEDTWPGVTELCTHLQSYAEFKPMDLSTIFADLEPAGVSLLSMMLCLDPVRRISAEAALKHAYFNDLVSLPLLLS. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08045 328 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08045 328 Gene3D Phosphorylase Kinase; domain 1 43 139 - -
Seca4g08045 328 SUPERFAMILY Protein kinase-like (PK-like) 58 320 IPR011009 -
Seca4g08045 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Seca4g08045 328 Gene3D Transferase(Phosphotransferase) domain 1 223 321 - -
Seca4g08045 328 PANTHER CELL DIVISION PROTEIN KINASE 238 317 - -
Seca4g08045 328 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08045 328 Pfam Protein kinase domain 61 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08045 328 Gene3D Transferase(Phosphotransferase) domain 1 140 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08045 Seca-Chr4 188714914 188718855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08045 56 324 Core Cell Cycle Gene Families AT3G48750 39.661 5.29e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca4g08045 Pkinase 6.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08045 K02206 - gmx:100799974 288.115