Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08044 ATGAGCAGGTCACAGTCACACCAGCCCAACCCCGTTCTCTCAGACACAGTTCTCTTTGCAGTCTTTGACCCAACCCATCTCTCTCATTTCTCAACCCTCTCTCTCCCTTTTTCCTTCTTCTTCTTCTTCTTATCTCTCTCAAAGTGGTTCTTCTTGTTTAATTTTCTCTCCTTCTCACCAATCTCTAAGACTTTGACATTTTTATATGGTTCAGTCAGTAAGAAAGCGACTTCTTTACGAAGACGAAATATTGACATCGATGAAGAACTTTCAGGCATTCAAAATGTAAGAATCTATACCTACAAAGAACTAAAAGTTGCCACTGATGATTTCAGTCCGGCTAATAAAATCGGGGAAGGTGGTTTTGGTTCTGTCTACAAGGGATTGCTAAAAGATGGGAAAATAGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAATTCATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAACTATATGGTTGTTGCGTGGAAGGCGATCACCGAATATTAGTTTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGTTGTAGGTGGAGGTCACAGCAATGTCTACTTTGATTGGCGAACACGATCTAGGATATGCATTGGGGTTGCACGTGGGCTTGCCTTTCTTCATGAGGAAGTACAGCCACATATTGTTCACAGGGATATAAAGGCAAGCAATATTCTCCTTGACAAGAACCTTAGGCCTATGATTGCGGATTTTGGTCTTGCAAAGCTTATTCCAACATACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGCTGACACGTAAAGCAGATATTTACAGTTTTGGCGTCCTCCTTGTGGAGATAGTCACTGGGAGATGTAACACAAATACACGATTACCCCTAGGAGAGCAATATATTCTAGAAAAGACGTGGGAGCTTTATGAGCGAAGGGAATTGGTAGAGCTGGTAGACATATCACTAAATGGGGAATTCGATGCTGAAGAGGCTTGTAATATTCTGAAAATTGGACTTCTCTGCACTCAGGATAATCCTAAGCTCAGGCCAACCATGTCTTCTGTGGTTAAGATGCTCACTGGAGAAAAGGATGTTAATGAAAGTAAGATTACAAAACCAGGCTTGATTTCAGATGTTATGGACCTTAAAATCAGAGAGCCAAAAAATAATAATGATACGAAGACTTCATCTTCATACAATGCTTCTTCTGCCTCAGACAGCCAGGGTACTACCATGTCATTTGCTGCTTCAAGTGCTGCAACTACAACCTTCAGTGTAAAATATGACCATACCATGTAA 1374 0.409 MSRSQSHQPNPVLSDTVLFAVFDPTHLSHFSTLSLPFSFFFFFLSLSKWFFLFNFLSFSPISKTLTFLYGSVSKKATSLRRRNIDIDEELSGIQNVRIYTYKELKVATDDFSPANKIGEGGFGSVYKGLLKDGKIAAIKVLSAESRQGVKEFMTEINVISEIEHENLVKLYGCCVEGDHRILVYNYLENNSLAQTLLVVGGGHSNVYFDWRTRSRICIGVARGLAFLHEEVQPHIVHRDIKASNILLDKNLRPMIADFGLAKLIPTYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVTGRCNTNTRLPLGEQYILEKTWELYERRELVELVDISLNGEFDAEEACNILKIGLLCTQDNPKLRPTMSSVVKMLTGEKDVNESKITKPGLISDVMDLKIREPKNNNDTKTSSSYNASSASDSQGTTMSFAASSAATTTFSVKYDHTM. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08044 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Seca4g08044 457 Gene3D Phosphorylase Kinase; domain 1 71 186 - -
Seca4g08044 457 FunFam cold-responsive protein kinase 1 187 400 - -
Seca4g08044 457 FunFam cold-responsive protein kinase 1 81 186 - -
Seca4g08044 457 CDD STKc_IRAK 117 386 - -
Seca4g08044 457 MobiDBLite consensus disorder prediction 410 433 - -
Seca4g08044 457 Pfam Protein kinase domain 114 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08044 457 ProSiteProfiles Protein kinase domain profile. 111 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08044 457 SMART serkin_6 111 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08044 457 Gene3D Transferase(Phosphotransferase) domain 1 187 399 - -
Seca4g08044 457 SUPERFAMILY Protein kinase-like (PK-like) 88 384 IPR011009 -
Seca4g08044 457 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 58 423 - -
Seca4g08044 457 ProSitePatterns Protein kinases ATP-binding region signature. 117 139 IPR017441 GO:0005524
Seca4g08044 457 MobiDBLite consensus disorder prediction 416 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08044 Seca-Chr4 188643225 188648680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08044 80 441 Receptor kinase-like Gene Family AT1G56120 51.648 6.98e-114 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08044 Pkinase 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08044 - - gmx:100800503 598.971