Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08039 ATGGATAATTATTTTGATGTTCCATGTGTTAATTTGGACGATGACAAAGATATGAGCAATTATGTTGATTCTAGTGATAGTGGAGATAGTGGTAGTGAGCCTACTACTAATAATGAAACAAATGAGCCATTAATGATGGATGTTGGAGGTGAAGTCTTTAAGAGGGTAACAGATTTGACTGCTGATGATATAGTAGCGTTACAGTTTGGTTCTCAAAAGGAAGCATATGTATTTTACAATGAAAATGCTAAAGCTCATGGATTTGTTGTAAGGAAAGACGAGGTAGAGAAGGATGTTAGGGGAAACATTGTGATGCGGCAATTTGTACGCAATAGGGAAGGACTAAGAAATAAAAAACATTTAATGAGATTAGATAAAAAAAGGGAGCATAGAGCACTTACCCGCACAAATTGTGTAGCAAAGCTTTGA 429 0.3566 MDNYFDVPCVNLDDDKDMSNYVDSSDSGDSGSEPTTNNETNEPLMMDVGGEVFKRVTDLTADDIVALQFGSQKEAYVFYNENAKAHGFVVRKDEVEKDVRGNIVMRQFVRNREGLRNKKHLMRLDKKREHRALTRTNCVAKL. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08039 142 Pfam FAR1 DNA-binding domain 78 142 IPR004330 -
Seca4g08039 142 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 20 141 - -
Seca4g08039 142 MobiDBLite consensus disorder prediction 16 45 - -
Seca4g08039 142 MobiDBLite consensus disorder prediction 23 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08039 Seca-Chr4 188529137 188529565 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g08039 FAR1 7.5e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08039 - - ccaj:109792835 144.821