Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08029 ATGGACTCTAACTTACCTCACCAATTTTTTCCTCAAATTGCAAGCAGGAATCTTGGCCAGAATTTCTTGACGGGTTCTCTACCTCCCGCCATTGGGAATCTAACTCGTATGCAATACATGACCTTTGGCATCAATGCTTTATCAGGGGAGCTTCCAAAAGAATTGGGAAATCTTACCGAGTTAATATTATTGGGTTTTGGGTCAAACAACTTCTCAGGATCTTTCCCATCTGAACTTGGGAAGCTGGTGAAATTACAACAACTCTACTTTGATAGTTCGGGAATTAGTGGTCCAATTCCTTCCACATTTGCAAATCTTAAGAATTTGGTGACAGTATGGGCTTCAGACACTGAACTCACAGGAAGTTTACCAGACTTCATAGGGAATTGGTCTAAGCTTCAAGTCTTGAGGTTTCAGGGTAATTCTTTTGAAGGCCCAATACCCTCATCATTTTCCAATTTGACTTCTTTGACAGAGTTGAGAATTAGTGGTTTATCCAATGGGAGCTCCTCACTGGACTTTGTAAGGAATATGAAGTCTTTGACTATCTTAGAACTGAGGAATAACAATATTTCTGGTTCAATTCCATCCACCATTGGAGAATTTCAAAATTTGACCCAGCTGGATCTAAGCTTCAACAACATCTCAGGACAAATTTCTGGATCAATTTTCAATTTGAGTTCACTCTCGTTCTTGTTTCTTGGAAATAACAAACTTACTGGTACTCTACCTACACAGAAAAGTTCATCTCTTCGAAATATAGACTTGTCATACAACGATTTATCAGGGAGCCTCCCCTCTTGGGTAAATGAACAAAATTTACAACTGAACTTTGTTGCCAACAACTTGACAATAGAAGGTTCAAATAGCAGTGGTTTGCCAACTGGGCTCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGGAAGATATTTTGACTTTGCAATAAAATGCGGTGGTCCCCAAATTACATCCACAGATAGAATTGTGTATCAAAGGGACAATGAGTCACTTGGTCCTGCTACATACTTTGTTACTGATACAAATAGATGGGCCGTTAGTAATGTCGGATTATTTACTAACGTCAACAACCCTGAATATAAAAGTTTTGTATCTAATCAGTTCACTGGTACTGTGAACTCGGAGCTCTTCCAAACAGCTCGGCTCTCTGCATCATCATTAAGATATTATGGTCTGGGGCTGGAAAATGGATTTTACAACATCACCCTCCAATTTGCAGAAACATCTATTCTGGATTCTGCCACATGGAAAAGCCTTGGGAGACGGGTGTTTGATATTTATATCCAGGGGACTCGTGTTTTGAAGGATTTCGACATACAAAAGGAAGCCGGGGGTGTCTCTTACAGAGCTGTCCAAAAGCAATTTAGGTTTGAAGTAAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCAGCTCAGGGTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTATCCCAGATTTCATACCTACTGTCAGTAATGAACCTCCAAGCAGTGAAAAGAATAGAACTGGGCTGATTGTTGGAATCGTTGTTGGTGTTGGAGTTGTAGCCTTTCTATCAGTTTTTTCCATTTTCTATTTCATTCAGAGAAGAAAACGCCTTGAGGATGAGGAAGAACTTTTAGGTATTGATACAAAGCCATACACTTTCAGCTATTCTGAGCTAAAGAATGCTACAAATGATTTCAATATGGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAGCTATCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATAGCTACTATATCTGCTGTGCAACATCGTAATCTTGTCAAATTGTATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTCTACGAATATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAATATTTTATTTCTCAATTGGTCCACACGCTATGATATCTGCATGGGTGTTGCAAGAGGTTTAACTTATTTACATGAGGAGTCACGGCTCCGTGTTGTACACCGTGATGTGAAGGCTAGTAATATTCTGCTTGATTATGAGCTTGTTCCAAAAATATCTGATTTTGGGTTGGCCAAATTATATGATGATAAAAAGACCCATATAAGCACCCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTTTTTTCCTTTGGCGTTGTAGCTCTAGAGTTAGTTAGTGGAAGGCCAAATTCTGATTCAACTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGAAGCTTCACGAAAACAACTGCATAACTGAACTTGTAGATCCCAGACTAACAGAGTTCAACAAGGAAGAAGTAAACCGCATTGTGGGAATAGCACTTTTATGCACTCAGACATCACCAACTTTACGGCCATCAATGTCACGTGTTGTGGCAATGCTTTCAGGAGACGTTGAAGTGAGCACTGTAACTTCAAGGCCTGGATACCTGACTGACTGGAAATTTGATGATGTGAGCAGCATAATGACCGACGTTGCAATGAAAGATACAAGTTACTACAATTCATCTGCAAGTACCAGCATAGTTGGTGGTACATACAATTCACCAATAGATCCTTCTAAATCCATCCTTAATGAGACTCTGAGGGAGGGTAGGTAA 2760 0.4018 MDSNLPHQFFPQIASRNLGQNFLTGSLPPAIGNLTRMQYMTFGINALSGELPKELGNLTELILLGFGSNNFSGSFPSELGKLVKLQQLYFDSSGISGPIPSTFANLKNLVTVWASDTELTGSLPDFIGNWSKLQVLRFQGNSFEGPIPSSFSNLTSLTELRISGLSNGSSSLDFVRNMKSLTILELRNNNISGSIPSTIGEFQNLTQLDLSFNNISGQISGSIFNLSSLSFLFLGNNKLTGTLPTQKSSSLRNIDLSYNDLSGSLPSWVNEQNLQLNFVANNLTIEGSNSSGLPTGLNCLQKNFPCNRGAGRYFDFAIKCGGPQITSTDRIVYQRDNESLGPATYFVTDTNRWAVSNVGLFTNVNNPEYKSFVSNQFTGTVNSELFQTARLSASSLRYYGLGLENGFYNITLQFAETSILDSATWKSLGRRVFDIYIQGTRVLKDFDIQKEAGGVSYRAVQKQFRFEVKENYLEIHLFWAGKGTCCIPAQGTYGPLIQAISAIPDFIPTVSNEPPSSEKNRTGLIVGIVVGVGVVAFLSVFSIFYFIQRRKRLEDEEELLGIDTKPYTFSYSELKNATNDFNMENKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNILFLNWSTRYDICMGVARGLTYLHEESRLRVVHRDVKASNILLDYELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSTLEGEKMYLLEWAWKLHENNCITELVDPRLTEFNKEEVNRIVGIALLCTQTSPTLRPSMSRVVAMLSGDVEVSTVTSRPGYLTDWKFDDVSSIMTDVAMKDTSYYNSSASTSIVGGTYNSPIDPSKSILNETLREGR. 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08029 919 SUPERFAMILY L domain-like 9 290 - -
Seca4g08029 919 Pfam Leucine rich repeat 180 239 IPR001611 GO:0005515
Seca4g08029 919 FunFam Leucine-rich repeat receptor-like protein kinase 313 504 - -
Seca4g08029 919 FunFam Putative LRR receptor-like serine/threonine-protein kinase 657 860 - -
Seca4g08029 919 Pfam Malectin domain 316 500 IPR021720 -
Seca4g08029 919 CDD STKc_IRAK 587 848 - -
Seca4g08029 919 FunFam Leucine-rich repeat receptor-like protein kinase 550 656 - -
Seca4g08029 919 FunFam Leucine-rich repeat receptor protein kinase EMS1 7 101 - -
Seca4g08029 919 Gene3D Ribonuclease Inhibitor 168 291 IPR032675 -
Seca4g08029 919 Gene3D Transferase(Phosphotransferase) domain 1 657 859 - -
Seca4g08029 919 Gene3D Phosphorylase Kinase; domain 1 544 656 - -
Seca4g08029 919 Gene3D Ribonuclease Inhibitor 2 167 IPR032675 -
Seca4g08029 919 ProSiteProfiles Leucine-rich repeat profile. 204 226 IPR001611 GO:0005515
Seca4g08029 919 FunFam Putative LRR receptor-like serine/threonine-protein kinase 168 291 - -
Seca4g08029 919 SUPERFAMILY Protein kinase-like (PK-like) 564 870 IPR011009 -
Seca4g08029 919 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 881 - -
Seca4g08029 919 SMART serkin_6 581 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08029 919 ProSiteProfiles Protein kinase domain profile. 581 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08029 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Seca4g08029 919 Gene3D - 314 504 - -
Seca4g08029 919 Pfam Protein tyrosine and serine/threonine kinase 582 848 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08029 Seca-Chr4 187928674 187952112 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08029 37 919 Receptor kinase-like Gene Family AT1G56120 63.923 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08029 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08029 - - lang:109352863 1502.65