Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g08021 | ATGGGGAATCTTCTTGTGAAGGATTTTGACATACAAAAGGAAGCTGGGGGCTTCTCTTACAGAGCTGTCCAAAAGCAATTTAGGATTGAGGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGAGTTGCTGCATACCAACTCAAGGTACTTATGGGCCTTTGATTCAAGCCATCAGTGTCACCCCAGATTCCATACCTACGCTCAGTAACAACGCCCCAAGCAGTGAAAATAATAAAACTGGTCTGATCATTGGAATTGTAGCTGGTGTTGGAGTTGTAAGCTTTCTATCACTTTTTGCCGTTTTCTATTTCGTTCAGAGAAGAAAACACAATGATGATGATGAAGAGCTTTTAGGTATTGATACAAAGCCATACACTTTCGGCTATTCTGAGTTAAGGAATGCTACAAATGACTTCAATCTTGACAATAAGCTTGGAGAGGGAGGTTTTGGACTTGTTTATAAGGGGACACTCAATGATGGAAGAGTTGTTGCTGTTAAACAACTATCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAGCTGAGATTGCTACTATATCTGTAGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATAAAGCATTATTTGCACCGGAGTTTGCCATGCGCGGACGCCTTACAGAGAAAGCAGATGTTTTTTCCTTTGGTGTTGTGGCTCTAGAGTTAGTTAGTGGAAGGGCAAATTCTGGTTCAAGTTTGGAAGGAGAGAAGACATTTCTTCTAGAATGGTTTACACTTTCTTGTGAAAATATTACCAAAGACATTGCTTCAAAGCCCCTTGGACCGTCTCCAGATCCTAGACTATCAGAATTCAAGGAGGAAGAAGTAAAACGCATCGTGGGAATAGCGCTTTTGTGCACTCAAGCATCACCAACTTTACGACCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATTGTGAAGTGAGCACTGTAACTTCGAGGCCTGGATACTTGACTGACTTTATTTTTGATGATCTGACCAGCATGATGTCTGACATTACAATTAGAGGATCGGATTCAAGTAATTACAATTCATCAGCAAGTACCAACATAGTTGGGGGTGCAGACCATTCACCAATAAGTCCTTCTAAACCCATCCTTCATTAG | 1215 | 0.4082 | MGNLLVKDFDIQKEAGGFSYRAVQKQFRIEVKENYLEIHLFWAGKGSCCIPTQGTYGPLIQAISVTPDSIPTLSNNAPSSENNKTGLIIGIVAGVGVVSFLSLFAVFYFVQRRKHNDDDEELLGIDTKPYTFGYSELRNATNDFNLDNKLGEGGFGLVYKGTLNDGRVVAVKQLSVGSHQGKSQFIAEIATISVVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDKALFAPEFAMRGRLTEKADVFSFGVVALELVSGRANSGSSLEGEKTFLLEWFTLSCENITKDIASKPLGPSPDPRLSEFKEEEVKRIVGIALLCTQASPTLRPSMSRVVAMLSGDCEVSTVTSRPGYLTDFIFDDLTSMMSDITIRGSDSSNYNSSASTNIVGGADHSPISPSKPILH. | 405 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g08021 | 404 | Pfam | Malectin domain | 2 | 63 | IPR021720 | - | |
Seca4g08021 | 404 | Pfam | Protein tyrosine and serine/threonine kinase | 230 | 337 | IPR001245 | GO:0004672|GO:0006468 | |
Seca4g08021 | 404 | Pfam | Protein tyrosine and serine/threonine kinase | 145 | 229 | IPR001245 | GO:0004672|GO:0006468 | |
Seca4g08021 | 404 | Gene3D | Phosphorylase Kinase; domain 1 | 106 | 216 | - | - | |
Seca4g08021 | 404 | Gene3D | Transferase(Phosphotransferase) domain 1 | 217 | 353 | - | - | |
Seca4g08021 | 404 | MobiDBLite | consensus disorder prediction | 375 | 392 | - | - | |
Seca4g08021 | 404 | ProSitePatterns | Protein kinases ATP-binding region signature. | 150 | 172 | IPR017441 | GO:0005524 | |
Seca4g08021 | 404 | SUPERFAMILY | Protein kinase-like (PK-like) | 127 | 370 | IPR011009 | - | |
Seca4g08021 | 404 | ProSiteProfiles | Protein kinase domain profile. | 144 | 404 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g08021 | 404 | FunFam | Leucine-rich repeat receptor-like protein kinase | 113 | 219 | - | - | |
Seca4g08021 | 404 | Gene3D | - | 1 | 69 | - | - | |
Seca4g08021 | 404 | MobiDBLite | consensus disorder prediction | 375 | 404 | - | - | |
Seca4g08021 | 404 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 3 | 230 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g08021 | Seca-Chr4 | 187841186 | 187846964 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g08021 | 230 | 403 | Receptor kinase-like Gene Family | AT1G56120 | 51.667 | 1.52e-42 | 157 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Seca4g08021 | PK_Tyr_Ser-Thr | 2.9e-05 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g08021 | - | - | lja:Lj3g3v0397040.2 | 389.423 |