Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08021 ATGGGGAATCTTCTTGTGAAGGATTTTGACATACAAAAGGAAGCTGGGGGCTTCTCTTACAGAGCTGTCCAAAAGCAATTTAGGATTGAGGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGAGTTGCTGCATACCAACTCAAGGTACTTATGGGCCTTTGATTCAAGCCATCAGTGTCACCCCAGATTCCATACCTACGCTCAGTAACAACGCCCCAAGCAGTGAAAATAATAAAACTGGTCTGATCATTGGAATTGTAGCTGGTGTTGGAGTTGTAAGCTTTCTATCACTTTTTGCCGTTTTCTATTTCGTTCAGAGAAGAAAACACAATGATGATGATGAAGAGCTTTTAGGTATTGATACAAAGCCATACACTTTCGGCTATTCTGAGTTAAGGAATGCTACAAATGACTTCAATCTTGACAATAAGCTTGGAGAGGGAGGTTTTGGACTTGTTTATAAGGGGACACTCAATGATGGAAGAGTTGTTGCTGTTAAACAACTATCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAGCTGAGATTGCTACTATATCTGTAGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATAAAGCATTATTTGCACCGGAGTTTGCCATGCGCGGACGCCTTACAGAGAAAGCAGATGTTTTTTCCTTTGGTGTTGTGGCTCTAGAGTTAGTTAGTGGAAGGGCAAATTCTGGTTCAAGTTTGGAAGGAGAGAAGACATTTCTTCTAGAATGGTTTACACTTTCTTGTGAAAATATTACCAAAGACATTGCTTCAAAGCCCCTTGGACCGTCTCCAGATCCTAGACTATCAGAATTCAAGGAGGAAGAAGTAAAACGCATCGTGGGAATAGCGCTTTTGTGCACTCAAGCATCACCAACTTTACGACCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATTGTGAAGTGAGCACTGTAACTTCGAGGCCTGGATACTTGACTGACTTTATTTTTGATGATCTGACCAGCATGATGTCTGACATTACAATTAGAGGATCGGATTCAAGTAATTACAATTCATCAGCAAGTACCAACATAGTTGGGGGTGCAGACCATTCACCAATAAGTCCTTCTAAACCCATCCTTCATTAG 1215 0.4082 MGNLLVKDFDIQKEAGGFSYRAVQKQFRIEVKENYLEIHLFWAGKGSCCIPTQGTYGPLIQAISVTPDSIPTLSNNAPSSENNKTGLIIGIVAGVGVVSFLSLFAVFYFVQRRKHNDDDEELLGIDTKPYTFGYSELRNATNDFNLDNKLGEGGFGLVYKGTLNDGRVVAVKQLSVGSHQGKSQFIAEIATISVVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDKALFAPEFAMRGRLTEKADVFSFGVVALELVSGRANSGSSLEGEKTFLLEWFTLSCENITKDIASKPLGPSPDPRLSEFKEEEVKRIVGIALLCTQASPTLRPSMSRVVAMLSGDCEVSTVTSRPGYLTDFIFDDLTSMMSDITIRGSDSSNYNSSASTNIVGGADHSPISPSKPILH. 405
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08021 404 Pfam Malectin domain 2 63 IPR021720 -
Seca4g08021 404 Pfam Protein tyrosine and serine/threonine kinase 230 337 IPR001245 GO:0004672|GO:0006468
Seca4g08021 404 Pfam Protein tyrosine and serine/threonine kinase 145 229 IPR001245 GO:0004672|GO:0006468
Seca4g08021 404 Gene3D Phosphorylase Kinase; domain 1 106 216 - -
Seca4g08021 404 Gene3D Transferase(Phosphotransferase) domain 1 217 353 - -
Seca4g08021 404 MobiDBLite consensus disorder prediction 375 392 - -
Seca4g08021 404 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Seca4g08021 404 SUPERFAMILY Protein kinase-like (PK-like) 127 370 IPR011009 -
Seca4g08021 404 ProSiteProfiles Protein kinase domain profile. 144 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08021 404 FunFam Leucine-rich repeat receptor-like protein kinase 113 219 - -
Seca4g08021 404 Gene3D - 1 69 - -
Seca4g08021 404 MobiDBLite consensus disorder prediction 375 404 - -
Seca4g08021 404 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 230 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca4g08021 Seca-Chr4 187841186 187846964 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08021 230 403 Receptor kinase-like Gene Family AT1G56120 51.667 1.52e-42 157
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08021 PK_Tyr_Ser-Thr 2.9e-05 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08021 - - lja:Lj3g3v0397040.2 389.423